Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   C5Y82_RS06725 Genome accession   NZ_CP027034
Coordinates   1349800..1350381 (+) Length   193 a.a.
NCBI ID   WP_012009792.1    Uniprot ID   -
Organism   Bacillus pumilus strain 150a     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1344800..1355381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS06695 (C5Y82_06695) dapD 1344924..1345634 (+) 711 WP_012009788.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  C5Y82_RS06700 (C5Y82_06700) - 1345667..1346845 (+) 1179 WP_088003925.1 N-acetyldiaminopimelate deacetylase -
  C5Y82_RS06705 (C5Y82_06705) - 1346896..1347138 (+) 243 WP_003211408.1 YkuS family protein -
  C5Y82_RS06710 (C5Y82_06710) - 1347165..1347974 (-) 810 WP_088003924.1 mechanosensitive ion channel family protein -
  C5Y82_RS06715 (C5Y82_06715) ahpA 1348246..1348788 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  C5Y82_RS06720 (C5Y82_06720) - 1348871..1349329 (+) 459 WP_012009791.1 TlpA disulfide reductase family protein -
  C5Y82_RS06725 (C5Y82_06725) rok 1349800..1350381 (+) 582 WP_012009792.1 transcriptional regulator Rok Regulator
  C5Y82_RS06730 (C5Y82_06730) - 1350432..1351349 (-) 918 WP_012009793.1 hypothetical protein -
  C5Y82_RS06735 (C5Y82_06735) - 1351434..1352015 (+) 582 WP_012009794.1 molybdenum cofactor guanylyltransferase -
  C5Y82_RS06740 (C5Y82_06740) - 1352045..1353061 (+) 1017 WP_012009795.1 thiazole biosynthesis adenylyltransferase ThiF -
  C5Y82_RS06745 (C5Y82_06745) glp 1353071..1354347 (+) 1277 Protein_1272 gephyrin-like molybdotransferase Glp -
  C5Y82_RS06750 (C5Y82_06750) mobB 1354329..1354853 (+) 525 WP_119125689.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  C5Y82_RS06755 (C5Y82_06755) - 1354850..1355341 (+) 492 WP_119124786.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21774.71 Da        Isoelectric Point: 9.7309

>NTDB_id=274642 C5Y82_RS06725 WP_012009792.1 1349800..1350381(+) (rok) [Bacillus pumilus strain 150a]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNSASSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=274642 C5Y82_RS06725 WP_012009792.1 1349800..1350381(+) (rok) [Bacillus pumilus strain 150a]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAGGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAGCTGGCTGCACAGGAAATGAGAAGTTACCAGCCG
CCTGCACAATCACAATCTAATTCTGCATCATCTTTAGGAACAGGGCAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGTAGAAGAGGCACAGCCCGCCCTGGTTCAAAGGCAGCTAAACTTCGTGAAGCTGCAATTAAAACGTTAA
AGCGTCATAATGCGGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTCTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.053

98.446

0.798

Multiple sequence alignment