Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   C5Y82_RS06610 Genome accession   NZ_CP027034
Coordinates   1331463..1331924 (-) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus strain 150a     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1326463..1336924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS06590 (C5Y82_06590) - 1327070..1327954 (+) 885 WP_119124780.1 cation diffusion facilitator family transporter -
  C5Y82_RS19170 - 1328018..1328170 (-) 153 WP_162900850.1 hypothetical protein -
  C5Y82_RS06595 (C5Y82_06595) - 1328472..1329011 (+) 540 WP_119124781.1 RDD family protein -
  C5Y82_RS06600 (C5Y82_06600) - 1329136..1330446 (+) 1311 WP_119124782.1 MFS transporter -
  C5Y82_RS06605 (C5Y82_06605) - 1330520..1331428 (+) 909 WP_012009773.1 chemotaxis protein -
  C5Y82_RS06610 (C5Y82_06610) kre 1331463..1331924 (-) 462 WP_012009774.1 YkyB family protein Regulator
  C5Y82_RS06615 (C5Y82_06615) - 1332425..1332640 (-) 216 WP_012009775.1 hypothetical protein -
  C5Y82_RS19175 - 1332816..1332983 (+) 168 WP_161985290.1 hypothetical protein -
  C5Y82_RS06620 (C5Y82_06620) - 1333048..1334325 (-) 1278 WP_041815467.1 MFS transporter -
  C5Y82_RS06625 (C5Y82_06625) - 1334399..1334896 (-) 498 WP_012009778.1 L,D-transpeptidase family protein -
  C5Y82_RS06630 (C5Y82_06630) - 1335053..1335910 (-) 858 WP_012009779.1 metallophosphoesterase -
  C5Y82_RS06635 (C5Y82_06635) fadH 1336047..1336811 (+) 765 WP_012009780.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=274641 C5Y82_RS06610 WP_012009774.1 1331463..1331924(-) (kre) [Bacillus pumilus strain 150a]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=274641 C5Y82_RS06610 WP_012009774.1 1331463..1331924(-) (kre) [Bacillus pumilus strain 150a]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAATTTCTTTATCTTTTGAAAAAACGTGCGCTGCAGAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACTAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAACTGCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment