Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   C5Y82_RS05045 Genome accession   NZ_CP027034
Coordinates   1030542..1031492 (+) Length   316 a.a.
NCBI ID   WP_119124657.1    Uniprot ID   -
Organism   Bacillus pumilus strain 150a     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025542..1036492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS05025 (C5Y82_05025) - 1026768..1027250 (+) 483 WP_012009481.1 hypothetical protein -
  C5Y82_RS05030 (C5Y82_05030) - 1027281..1028720 (-) 1440 WP_012009482.1 PLP-dependent aminotransferase family protein -
  C5Y82_RS05035 (C5Y82_05035) - 1028865..1030034 (+) 1170 WP_119124655.1 MFS transporter -
  C5Y82_RS05040 (C5Y82_05040) - 1030100..1030375 (+) 276 WP_119124656.1 barstar family protein -
  C5Y82_RS05045 (C5Y82_05045) ceuB 1030542..1031492 (+) 951 WP_119124657.1 ABC transporter permease Machinery gene
  C5Y82_RS05050 (C5Y82_05050) - 1031485..1032435 (+) 951 WP_119124658.1 iron chelate uptake ABC transporter family permease subunit -
  C5Y82_RS05055 (C5Y82_05055) - 1032426..1033184 (+) 759 WP_088002161.1 ATP-binding cassette domain-containing protein -
  C5Y82_RS05060 (C5Y82_05060) - 1033207..1034151 (+) 945 WP_012009488.1 siderophore ABC transporter substrate-binding protein -
  C5Y82_RS05065 (C5Y82_05065) - 1034292..1035260 (+) 969 WP_012009489.1 LCP family protein -
  C5Y82_RS05070 (C5Y82_05070) - 1035329..1035691 (-) 363 WP_041815357.1 hypothetical protein -
  C5Y82_RS05075 (C5Y82_05075) - 1035843..1036460 (+) 618 WP_012009491.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34842.24 Da        Isoelectric Point: 9.8501

>NTDB_id=274630 C5Y82_RS05045 WP_119124657.1 1030542..1031492(+) (ceuB) [Bacillus pumilus strain 150a]
MKLYQLSLLFVCLACVSLFVGVQDVSILQLFHLTGEQVHTLVSSRIPRLMSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILVAMLVFTNASPLMKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYLSVPLLIIAYLYADRFTVAGMGESFAVNLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=274630 C5Y82_RS05045 WP_119124657.1 1030542..1031492(+) (ceuB) [Bacillus pumilus strain 150a]
ATGAAGTTGTATCAATTAAGTTTATTATTTGTATGTTTGGCATGTGTATCACTGTTTGTCGGTGTACAGGATGTGTCCAT
TTTACAGCTGTTTCATTTAACAGGTGAACAAGTGCATACGTTAGTTTCAAGTCGCATCCCGCGTCTCATGAGTATTGTGC
TTGCTGGCATGAGCCTTAGTTTATGCGGCTTTATCATGCAAAGCATGACGAGGAATAAATTTGTTTCCCCCACCACTGCA
GGGACGATGGATTGGGCGAAGCTTGGTATTTTAGTCGCAATGCTTGTTTTTACGAATGCGAGCCCGCTCATGAAAATGGG
AATCGCGTTTCTATTTACTTTAGCTGGGAACCTTCTATTCTTAAAAATTTTGCGTCATATTAAGGTGAACGATACGATCT
ATGTACCGTTAGTCGGCTTAATGTTTGGCGGGATTGTCAGTTCAATATCTACGTTTATAGCCTATAAATATGATCTGATC
CAAAACGTATCCGCATGGCTTCAAGGGGATTTTTCTCTTATTGTTCAGGGACGTTATGAACTGCTCTATCTGAGTGTTCC
ACTATTGATCATTGCGTATTTATATGCTGACCGCTTTACAGTAGCAGGTATGGGCGAGAGCTTTGCTGTTAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGTTTGGTGATTGTTTCGATGATTACATCTGTCACCATATTAACTGTCGGAATG
CTGCCATTCCTAGGCTTAATCATTCCGAATATTGTATCGATCTACCGCGGCGATCACTTGAAAAAGAGCCTTCCGCATAC
AGCCTTACTAGGAGCCATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTATCCATATGAAATTTCAGTTG
GGCTTATGGTCGGCATCATCGGGAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAACGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.827

95.253

0.494

Multiple sequence alignment