Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C5Y82_RS01815 Genome accession   NZ_CP027034
Coordinates   336716..337144 (-) Length   142 a.a.
NCBI ID   WP_119124397.1    Uniprot ID   -
Organism   Bacillus pumilus strain 150a     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 331716..342144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS01785 (C5Y82_01785) - 331874..332203 (+) 330 WP_119125670.1 YckD family protein -
  C5Y82_RS01790 (C5Y82_01790) - 332250..333014 (-) 765 WP_119124393.1 MBL fold metallo-hydrolase -
  C5Y82_RS01795 (C5Y82_01795) - 333130..333546 (+) 417 WP_012008875.1 Lrp/AsnC family transcriptional regulator -
  C5Y82_RS01800 (C5Y82_01800) - 333576..334382 (+) 807 WP_119124394.1 AAC(3) family N-acetyltransferase -
  C5Y82_RS01805 (C5Y82_01805) - 334384..334770 (-) 387 WP_119124395.1 competence protein ComJ -
  C5Y82_RS01810 (C5Y82_01810) - 334891..336588 (-) 1698 WP_119124396.1 methyl-accepting chemotaxis protein -
  C5Y82_RS01815 (C5Y82_01815) nucA/comI 336716..337144 (-) 429 WP_119124397.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  C5Y82_RS01825 (C5Y82_01825) - 337512..339581 (+) 2070 WP_119124399.1 hydantoinase/oxoprolinase family protein -
  C5Y82_RS01830 (C5Y82_01830) - 339571..341556 (+) 1986 WP_012008882.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15899.83 Da        Isoelectric Point: 5.2116

>NTDB_id=274623 C5Y82_RS01815 WP_119124397.1 336716..337144(-) (nucA/comI) [Bacillus pumilus strain 150a]
MKLLKIILLLLLIVIGVATGYIQLEQSKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRIHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=274623 C5Y82_RS01815 WP_119124397.1 336716..337144(-) (nucA/comI) [Bacillus pumilus strain 150a]
ATGAAACTTCTTAAAATTATTCTCTTGCTTTTACTGATCGTCATTGGTGTAGCAACAGGTTATATTCAACTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACGATTCACTTCCCATCAGATCGTTATCCCGAAACCGCGAAGCACA
TAGAGGAGGCAATTGATGAAGGCCATTCATCCGTATGTACGATTGACCGTATACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATTCCAACAAAGCGCGGATATGATCGGGATGAATGGCCTATGGCGATGTGTAAGGAAGGAGGAACAGGGGC
TTCAGTCAAGTATATTAGTCCTTCAGATAATAGAGGAGCAGGCTCATGGGTCGGTCATCAATTATCTGATGATCCCGATG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.942

85.211

0.57

Multiple sequence alignment