Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC77_RS09195 Genome accession   NZ_CP027030
Coordinates   1819943..1821364 (+) Length   473 a.a.
NCBI ID   WP_011150112.1    Uniprot ID   A0AAN1UC63
Organism   Vibrio vulnificus strain FORC_077     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1814943..1826364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC77_RS09165 (FORC77_1634) cobC 1815626..1816264 (-) 639 WP_131069915.1 alpha-ribazole phosphatase -
  FORC77_RS09170 (FORC77_1635) cobU 1816274..1816834 (-) 561 WP_011080622.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  FORC77_RS09175 (FORC77_1636) - 1816837..1817604 (-) 768 WP_011080623.1 adenosylcobinamide-GDP ribazoletransferase -
  FORC77_RS09180 (FORC77_1637) cobT 1817606..1818634 (-) 1029 WP_039553417.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  FORC77_RS09190 (FORC77_1638) - 1819171..1819869 (+) 699 WP_045597850.1 oxidoreductase -
  FORC77_RS09195 (FORC77_1639) sbcB 1819943..1821364 (+) 1422 WP_011150112.1 exodeoxyribonuclease I Machinery gene
  FORC77_RS09200 (FORC77_1640) - 1821410..1821781 (+) 372 WP_043877143.1 CidA/LrgA family protein -
  FORC77_RS09205 (FORC77_1641) - 1821784..1822461 (+) 678 WP_011080628.1 LrgB family protein -
  FORC77_RS09210 (FORC77_1642) - 1822774..1823166 (+) 393 WP_011150110.1 SulA-like leucine-rich domain-containing protein -
  FORC77_RS09215 (FORC77_1643) - 1823369..1824472 (+) 1104 WP_011080630.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  FORC77_RS09220 (FORC77_1644) - 1824546..1824950 (-) 405 WP_103276914.1 transporter -
  FORC77_RS09225 (FORC77_1645) - 1825189..1825956 (-) 768 WP_011080632.1 phospholipase A -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54741.99 Da        Isoelectric Point: 5.1722

>NTDB_id=274598 FORC77_RS09195 WP_011150112.1 1819943..1821364(+) (sbcB) [Vibrio vulnificus strain FORC_077]
MQQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVIYCRPPADYLPAPEAALITGITPQKAQKEGLPEP
EFIAKIHAELSRPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYSWSWQNGNSRWDLLDVMRACHALRPEGVEWPENEEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPLAWHPTNNNAVIVVDLAKDPQPLFDLDADALHERLYTRHDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAAN
IGIDREQCLANLALIRQHPEVREKLVQLFSIEREFEKSHDVDTLLYDGFFSPADKASMDIIRQTDPTHLAALDITFNDKR
IEPLLFRYRARNYPWTLDENEQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKMAILKSVYRYTESLIS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=274598 FORC77_RS09195 WP_011150112.1 1819943..1821364(+) (sbcB) [Vibrio vulnificus strain FORC_077]
ATGCAGCAAGACAATCAGCCCACTTTCTTCTTTTTTGACTATGAGACTTGGGGAACCAGTCCAGCAAAAGATCGCCCATC
GCAATTTGCTGGCGTTCGTACCGATGAAAACTTCAATATCATCGGCGAACCATTGGTGATTTATTGTCGCCCACCTGCCG
ATTATTTACCGGCCCCCGAAGCCGCACTCATTACCGGAATTACGCCACAAAAAGCGCAGAAAGAAGGCTTACCCGAGCCA
GAATTTATCGCAAAAATCCACGCAGAGTTGTCGCGTCCGAACACCACTAGCCTTGGCTACAACAGCATTCGCTTTGATGA
CGAAGTCACGCGTTATACCTGCTATCGCAATTTCCTCGATCCCTATTCATGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATCTGCTTGATGTGATGCGAGCTTGTCACGCATTAAGACCGGAAGGGGTGGAATGGCCGGAAAATGAAGAAGGCTTTACC
AGCTTTAAACTGGAGCACCTTTCTGTGGCCAATGGCATTGAACACAGTAACGCCCATGATGCGATGGCCGATGTGATCGC
CACCATCGAAATGGCGAAAAAAGTCAAAGCCGCGCAACCCAAATTGTTTGATTACTTCTTTAGCATGCGCCATAAGCGTA
AGCTCAATGAGCTGATCGATATTGTTAACATGACCCCTTTGATGCATGTCTCTGGCATGTTAGGCCGTGAATGCCAATAC
ACCAGTTGGATAGTGCCGTTAGCTTGGCACCCGACCAACAACAATGCGGTGATTGTGGTCGACTTAGCCAAAGATCCTCA
ACCCCTCTTTGATTTGGATGCCGATGCGCTGCATGAGCGTCTTTACACTCGTCATGATGAGCTCGGCGATTTATTGCCTG
TGCCAGTTAAACTGGTGCATTTGAATAAGTGCCCAATTTTAGCACCAGCCAAAACCCTCACTGCGGAGAATGCCGCCAAT
ATCGGCATCGACCGAGAACAATGTTTGGCAAACTTAGCCCTTATTCGCCAGCACCCAGAAGTGCGAGAAAAGTTGGTGCA
GCTGTTCTCAATTGAACGCGAGTTCGAGAAAAGTCATGATGTCGATACCCTGTTGTACGACGGTTTCTTCTCGCCTGCCG
ACAAAGCCTCGATGGACATTATCCGCCAAACCGATCCAACGCACCTTGCCGCTTTGGACATCACGTTTAACGATAAACGC
ATCGAGCCGCTGCTGTTTCGCTACCGTGCGCGCAATTACCCATGGACGTTGGATGAGAACGAACAGCGCCGTTGGGCGAA
TCATTGCCGCGAATACTTCGAAAGTCGAATTGAAGAGTACATGCTTAATTTGGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAAATGGCGATATTAAAATCCGTGTACCGCTATACTGAGAGCTTGATCTCATAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)

Exonuclease (RNase_T)

(11-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

80.72

99.789

0.805

Multiple sequence alignment