Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | C5S64_RS13720 | Genome accession | NZ_CP027027 |
| Coordinates | 2583431..2584060 (+) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Shigella dysenteriae strain E670/74 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2556015..2593232 | 2583431..2584060 | within | 0 |
Gene organization within MGE regions
Location: 2556015..2593232
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C5S64_RS13585 | - | 2556220..2557110 (-) | 891 | WP_000055968.1 | LLM class flavin-dependent oxidoreductase | - |
| C5S64_RS13590 | ssuA | 2557107..2558066 (-) | 960 | WP_001244331.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| C5S64_RS13595 | ssuE | 2558059..2558634 (-) | 576 | WP_001263932.1 | NADPH-dependent FMN reductase | - |
| C5S64_RS13605 | - | 2558990..2559532 (+) | 543 | WP_000750284.1 | fimbrial protein | - |
| C5S64_RS13610 | - | 2559673..2560704 (+) | 1032 | WP_005010759.1 | IS630-like element IS630 family transposase | - |
| C5S64_RS13615 | - | 2560770..2561471 (+) | 702 | WP_000845152.1 | molecular chaperone | - |
| C5S64_RS13620 | - | 2561496..2564096 (+) | 2601 | WP_000286304.1 | fimbrial biogenesis usher protein | - |
| C5S64_RS13625 | - | 2564087..2565157 (+) | 1071 | WP_001165657.1 | fimbrial protein | - |
| C5S64_RS13630 | - | 2565169..2565711 (+) | 543 | WP_000730630.1 | fimbrial protein | - |
| C5S64_RS13635 | - | 2565719..2566233 (+) | 515 | Protein_2481 | fimbrial protein | - |
| C5S64_RS13640 | - | 2566199..2566935 (+) | 737 | Protein_2482 | fimbrial chaperone | - |
| C5S64_RS13645 | pyrD | 2567046..2568056 (+) | 1011 | WP_004969863.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| C5S64_RS13650 | zapC | 2568230..2568772 (+) | 543 | WP_004991542.1 | cell division protein ZapC | - |
| C5S64_RS13655 | ycbX | 2568769..2569878 (-) | 1110 | WP_000224271.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| C5S64_RS13660 | rlmKL | 2570122..2572230 (+) | 2109 | WP_001086560.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| C5S64_RS13665 | - | 2572242..2574149 (+) | 1908 | WP_000053029.1 | ABC transporter ATP-binding protein | - |
| C5S64_RS13670 | pqiA | 2574279..2575532 (+) | 1254 | WP_000333188.1 | membrane integrity-associated transporter subunit PqiA | - |
| C5S64_RS13675 | pqiB | 2575537..2577177 (+) | 1641 | WP_000445541.1 | intermembrane transport protein PqiB | - |
| C5S64_RS13680 | pqiC | 2577174..2577737 (+) | 564 | WP_000759096.1 | membrane integrity-associated transporter subunit PqiC | - |
| C5S64_RS13685 | rmf | 2577993..2578160 (+) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| C5S64_RS13690 | fabA | 2578230..2578748 (-) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| C5S64_RS13695 | - | 2578817..2580577 (-) | 1761 | WP_000156472.1 | AAA family ATPase | - |
| C5S64_RS13700 | matP | 2580763..2581215 (+) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| C5S64_RS13705 | ompA | 2581291..2582346 (-) | 1056 | WP_004991512.1 | porin OmpA | - |
| C5S64_RS13715 | sulA | 2582703..2583212 (-) | 510 | WP_000288718.1 | SOS-induced cell division inhibitor SulA | - |
| C5S64_RS13720 | sxy/tfoX | 2583431..2584060 (+) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| C5S64_RS13725 | yccS | 2584023..2586185 (-) | 2163 | WP_000875029.1 | YccS family putative transporter | - |
| C5S64_RS13730 | - | 2586195..2586641 (-) | 447 | WP_001261233.1 | YccF domain-containing protein | - |
| C5S64_RS13735 | helD | 2586764..2588818 (+) | 2055 | WP_005011496.1 | DNA helicase IV | - |
| C5S64_RS13740 | mgsA | 2588850..2589308 (-) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| C5S64_RS13745 | - | 2589404..2590066 (-) | 663 | WP_000847784.1 | DUF2057 family protein | - |
| C5S64_RS13750 | - | 2590239..2590652 (+) | 414 | WP_000665217.1 | CoA-binding protein | - |
| C5S64_RS13755 | hspQ | 2590697..2591014 (-) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| C5S64_RS13760 | rlmI | 2591072..2592262 (-) | 1191 | WP_000116305.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| C5S64_RS13765 | yccX | 2592357..2592635 (+) | 279 | WP_000048239.1 | acylphosphatase | - |
| C5S64_RS13770 | tusE | 2592632..2592961 (-) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=274564 C5S64_RS13720 WP_000839153.1 2583431..2584060(+) (sxy/tfoX) [Shigella dysenteriae strain E670/74]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=274564 C5S64_RS13720 WP_000839153.1 2583431..2584060(+) (sxy/tfoX) [Shigella dysenteriae strain E670/74]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTTAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTTAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |