Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D1792_RS21845 Genome accession   NZ_CP032085
Coordinates   4569053..4569658 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain ATCC 25922     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4564053..4574658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1792_RS26335 - 4564607..4564705 (+) 99 Protein_4326 hypothetical protein -
  D1792_RS21815 (D1792_23575) rsmS 4564758..4564919 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  D1792_RS21820 (D1792_23580) priC 4564933..4565460 (-) 528 WP_000858961.1 primosomal replication protein N'' -
  D1792_RS21825 (D1792_23585) ybaN 4565530..4565907 (+) 378 WP_001188900.1 DUF454 family protein -
  D1792_RS21830 (D1792_23595) apt 4566060..4566611 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  D1792_RS21835 (D1792_23600) dnaX 4566740..4568671 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  D1792_RS21840 (D1792_23605) ybaB 4568724..4569053 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  D1792_RS21845 (D1792_23610) recR 4569053..4569658 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  D1792_RS21850 (D1792_23615) htpG 4569768..4571642 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  D1792_RS21855 (D1792_23625) adk 4571823..4572467 (+) 645 WP_001313630.1 adenylate kinase -
  D1792_RS21860 (D1792_23630) hemH 4572599..4573561 (+) 963 WP_001250114.1 ferrochelatase -
  D1792_RS21865 (D1792_23635) aes 4573558..4574517 (-) 960 WP_000801819.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=274561 D1792_RS21845 WP_001195025.1 4569053..4569658(+) (recR) [Escherichia coli strain ATCC 25922]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=274561 D1792_RS21845 WP_001195025.1 4569053..4569658(+) (recR) [Escherichia coli strain ATCC 25922]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGTCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443