Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D1792_RS20445 Genome accession   NZ_CP032085
Coordinates   4261516..4261992 (-) Length   158 a.a.
NCBI ID   WP_001313574.1    Uniprot ID   -
Organism   Escherichia coli strain ATCC 25922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4256516..4266992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1792_RS20405 (D1792_21975) - 4256635..4257768 (-) 1134 WP_000555401.1 IS110-like element ISEc45 family transposase -
  D1792_RS20410 (D1792_21980) - 4257829..4258017 (+) 189 Protein_4044 IS66 family transposase -
  D1792_RS20415 (D1792_21985) - 4258165..4259153 (+) 989 Protein_4045 IS630 family transposase -
  D1792_RS20420 (D1792_21990) - 4259232..4259724 (-) 493 Protein_4046 DUF5983 family protein -
  D1792_RS20425 (D1792_21995) - 4259721..4260098 (-) 378 WP_000854730.1 TA system toxin CbtA family protein -
  D1792_RS20430 (D1792_22000) - 4260145..4260519 (-) 375 WP_001285481.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D1792_RS20435 (D1792_22005) - 4260569..4261213 (-) 645 WP_000086761.1 hypothetical protein -
  D1792_RS20440 (D1792_22010) - 4261232..4261453 (-) 222 WP_000692315.1 DUF987 domain-containing protein -
  D1792_RS20445 (D1792_22015) radC 4261516..4261992 (-) 477 WP_001313574.1 RadC family protein Machinery gene
  D1792_RS20450 (D1792_22020) - 4262008..4262481 (-) 474 WP_001313575.1 antirestriction protein -
  D1792_RS20455 (D1792_22025) - 4262575..4262820 (-) 246 WP_001164966.1 hypothetical protein -
  D1792_RS20460 (D1792_22030) - 4262820..4263641 (-) 822 WP_001234359.1 DUF932 domain-containing protein -
  D1792_RS20465 (D1792_22035) - 4263741..4263974 (-) 234 WP_001213776.1 DUF905 family protein -
  D1792_RS20470 (D1792_22040) - 4264092..4264544 (-) 453 WP_000682723.1 hypothetical protein -
  D1792_RS20475 (D1792_22050) - 4264979..4265608 (-) 630 WP_000680181.1 hypothetical protein -
  D1792_RS20480 (D1792_22055) - 4265664..4266131 (-) 468 WP_001239911.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17749.42 Da        Isoelectric Point: 7.6152

>NTDB_id=274556 D1792_RS20445 WP_001313574.1 4261516..4261992(-) (radC) [Escherichia coli strain ATCC 25922]
MQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274556 D1792_RS20445 WP_001313574.1 4261516..4261992(-) (radC) [Escherichia coli strain ATCC 25922]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
TAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGGCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399