Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D1792_RS18565 Genome accession   NZ_CP032085
Coordinates   3872265..3872741 (+) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain ATCC 25922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3867265..3877741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1792_RS18545 (D1792_20000) - 3867386..3870232 (+) 2847 WP_001546341.1 Ag43/Cah family autotransporter adhesin -
  D1792_RS18550 (D1792_20005) - 3870303..3870498 (+) 196 Protein_3675 DUF905 family protein -
  D1792_RS18555 (D1792_20015) - 3870616..3871434 (+) 819 WP_001234738.1 DUF932 domain-containing protein -
  D1792_RS18560 (D1792_20025) - 3871776..3872249 (+) 474 WP_001350782.1 antirestriction protein -
  D1792_RS18565 (D1792_20030) radC 3872265..3872741 (+) 477 WP_001186775.1 RadC family protein Machinery gene
  D1792_RS18570 (D1792_20035) - 3872804..3873025 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  D1792_RS18575 (D1792_20040) - 3873188..3873556 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D1792_RS18580 (D1792_20045) - 3873646..3874023 (+) 378 WP_000854759.1 TA system toxin CbtA family protein -
  D1792_RS18585 (D1792_20050) - 3874020..3874508 (+) 489 WP_000761690.1 DUF5983 family protein -
  D1792_RS18590 (D1792_20055) - 3874525..3874701 (+) 177 WP_000839286.1 DUF957 domain-containing protein -
  D1792_RS18595 - 3874807..3874956 (+) 150 Protein_3684 hypothetical protein -
  D1792_RS26445 (D1792_20060) - 3874926..3875060 (+) 135 Protein_3685 transcriptional regulator -
  D1792_RS26300 - 3875323..3875628 (+) 306 Protein_3686 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=274551 D1792_RS18565 WP_001186775.1 3872265..3872741(+) (radC) [Escherichia coli strain ATCC 25922]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274551 D1792_RS18565 WP_001186775.1 3872265..3872741(+) (radC) [Escherichia coli strain ATCC 25922]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAACGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399