Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D1792_RS14820 Genome accession   NZ_CP032085
Coordinates   3067909..3068577 (-) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain ATCC 25922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3062909..3073577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1792_RS14790 (D1792_15970) rfaQ 3063087..3064145 (-) 1059 WP_000360415.1 lipopolysaccharide core heptosyltransferase RfaQ -
  D1792_RS14795 (D1792_15975) waaA 3064558..3065835 (+) 1278 WP_000891564.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  D1792_RS14800 (D1792_15980) coaD 3065843..3066322 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  D1792_RS14805 (D1792_15985) mutM 3066361..3067170 (-) 810 WP_001114542.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  D1792_RS14810 (D1792_15990) rpmG 3067268..3067435 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  D1792_RS14815 (D1792_15995) rpmB 3067456..3067692 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  D1792_RS14820 (D1792_16000) radC 3067909..3068577 (-) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  D1792_RS14825 (D1792_16005) coaBC 3068749..3069969 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D1792_RS14830 (D1792_16010) dut 3069947..3070405 (+) 459 WP_000976070.1 dUTP diphosphatase -
  D1792_RS14835 (D1792_16015) slmA 3070512..3071108 (+) 597 WP_000818603.1 nucleoid occlusion factor SlmA -
  D1792_RS14840 (D1792_16020) pyrE 3071145..3071786 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  D1792_RS14845 (D1792_16025) rph 3071852..3072568 (-) 717 WP_001247093.1 ribonuclease PH -
  D1792_RS14850 (D1792_16035) yicC 3072695..3073558 (+) 864 WP_000621330.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=274526 D1792_RS14820 WP_001297375.1 3067909..3068577(-) (radC) [Escherichia coli strain ATCC 25922]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=274526 D1792_RS14820 WP_001297375.1 3067909..3068577(-) (radC) [Escherichia coli strain ATCC 25922]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAGCAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTCGCCCAGTTA
AAGGGGATTGCCGAACTGGCGCGGCGTTACTACAACGTACGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGCGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCCCAACACAGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCGCATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496