Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D1792_RS00310 Genome accession   NZ_CP032085
Coordinates   66211..66687 (+) Length   158 a.a.
NCBI ID   WP_001537421.1    Uniprot ID   -
Organism   Escherichia coli strain ATCC 25922     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 61211..71687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1792_RS00290 (D1792_00380) - 63772..64227 (+) 456 WP_000581502.1 IrmA family protein -
  D1792_RS25810 (D1792_00385) - 64370..64459 (+) 90 WP_230607454.1 DUF905 family protein -
  D1792_RS00300 (D1792_00390) - 64638..65459 (+) 822 WP_001234710.1 DUF932 domain-containing protein -
  D1792_RS00305 (D1792_00395) - 65722..66195 (+) 474 WP_000855076.1 antirestriction protein -
  D1792_RS00310 (D1792_00400) radC 66211..66687 (+) 477 WP_001537421.1 RadC family protein Machinery gene
  D1792_RS00315 (D1792_00405) - 66750..66971 (+) 222 WP_000692329.1 DUF987 domain-containing protein -
  D1792_RS00320 (D1792_00410) - 66990..67634 (+) 645 WP_000094915.1 hypothetical protein -
  D1792_RS00325 (D1792_00415) - 67684..68052 (+) 369 WP_001546171.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D1792_RS00330 (D1792_00420) - 68141..68518 (+) 378 WP_000854690.1 TA system toxin CbtA family protein -
  D1792_RS00335 (D1792_00425) - 68515..69003 (+) 489 WP_001546173.1 DUF5983 family protein -
  D1792_RS00340 (D1792_00430) - 69023..69220 (+) 198 WP_000772027.1 DUF957 domain-containing protein -
  D1792_RS00345 (D1792_00435) - 69305..70148 (+) 844 Protein_71 DUF4942 domain-containing protein -
  D1792_RS00355 (D1792_00445) ghrA 70619..71557 (+) 939 WP_000351287.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=274483 D1792_RS00310 WP_001537421.1 66211..66687(+) (radC) [Escherichia coli strain ATCC 25922]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274483 D1792_RS00310 WP_001537421.1 66211..66687(+) (radC) [Escherichia coli strain ATCC 25922]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392