Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D2195_RS21635 Genome accession   NZ_CP032078
Coordinates   4449571..4450047 (+) Length   158 a.a.
NCBI ID   WP_077520626.1    Uniprot ID   -
Organism   Escherichia coli strain CT30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4444571..4455047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2195_RS21600 (D2195_23250) - 4445013..4445237 (+) 225 Protein_4283 HTH domain-containing protein -
  D2195_RS21605 (D2195_23255) - 4445329..4446557 (+) 1229 WP_212408101.1 IS3-like element IS2 family transposase -
  D2195_RS26370 - 4446778..4447029 (+) 252 WP_251379476.1 WYL domain-containing protein -
  D2195_RS21615 (D2195_23265) - 4447177..4447854 (+) 678 WP_112042006.1 hypothetical protein -
  D2195_RS21620 (D2195_23270) - 4447860..4448093 (+) 234 WP_001278287.1 DUF905 family protein -
  D2195_RS21625 (D2195_23275) - 4448183..4449001 (+) 819 WP_001175149.1 DUF932 domain-containing protein -
  D2195_RS21630 (D2195_23280) - 4449083..4449562 (+) 480 WP_113837565.1 antirestriction protein -
  D2195_RS21635 (D2195_23290) radC 4449571..4450047 (+) 477 WP_077520626.1 RadC family protein Machinery gene
  D2195_RS21640 (D2195_23295) - 4450116..4450337 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  D2195_RS21645 (D2195_23300) cbeA 4450416..4450793 (+) 378 WP_015953067.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D2195_RS21650 (D2195_23305) - 4450840..4451217 (+) 378 WP_001094436.1 TA system toxin CbtA family protein -
  D2195_RS21655 (D2195_23310) - 4451214..4451702 (+) 489 WP_000761714.1 DUF5983 family protein -
  D2195_RS21660 (D2195_23315) - 4451714..4451911 (+) 198 WP_077520623.1 DUF957 domain-containing protein -
  D2195_RS21665 (D2195_23320) - 4451996..4452841 (+) 846 WP_077520620.1 DUF4942 domain-containing protein -
  D2195_RS21670 (D2195_23325) - 4452912..4454447 (+) 1536 WP_077520617.1 EAL domain-containing protein -
  D2195_RS26730 - 4454880..4454991 (+) 112 Protein_4298 integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17701.42 Da        Isoelectric Point: 7.6149

>NTDB_id=274463 D2195_RS21635 WP_077520626.1 4449571..4450047(+) (radC) [Escherichia coli strain CT30]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNKLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVIPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274463 D2195_RS21635 WP_077520626.1 4449571..4450047(+) (radC) [Escherichia coli strain CT30]
ATGCAACAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATAAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCGCA
CAATCACCCGTCCGGTGAAGTCATCCCCAGCAAGGCAGACCGCCTTATCACCGAGCGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392