Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D2195_RS20500 Genome accession   NZ_CP032078
Coordinates   4218877..4219353 (-) Length   158 a.a.
NCBI ID   WP_001186710.1    Uniprot ID   -
Organism   Escherichia coli strain CT30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4213877..4224353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2195_RS26695 (D2195_22025) - 4216569..4216703 (-) 135 Protein_4059 transcriptional regulator -
  D2195_RS26345 - 4216715..4216816 (-) 102 Protein_4060 hypothetical protein -
  D2195_RS20475 (D2195_22030) - 4216901..4217098 (-) 198 WP_000839280.1 DUF957 domain-containing protein -
  D2195_RS20480 (D2195_22035) - 4217110..4217598 (-) 489 WP_212408092.1 DUF5983 family protein -
  D2195_RS20485 (D2195_22040) - 4217595..4217972 (-) 378 WP_000854694.1 TA system toxin CbtA family protein -
  D2195_RS20490 (D2195_22045) cbeA 4218062..4218430 (-) 369 WP_065793167.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D2195_RS20495 (D2195_22050) - 4218593..4218814 (-) 222 WP_000692303.1 DUF987 domain-containing protein -
  D2195_RS20500 (D2195_22055) radC 4218877..4219353 (-) 477 WP_001186710.1 RadC family protein Machinery gene
  D2195_RS20505 (D2195_22060) - 4219365..4219844 (-) 480 WP_113837565.1 antirestriction protein -
  D2195_RS20510 (D2195_22065) - 4219926..4220744 (-) 819 WP_212408093.1 DUF932 domain-containing protein -
  D2195_RS20515 (D2195_22075) - 4220843..4221076 (-) 234 WP_001278287.1 DUF905 family protein -
  D2195_RS20520 (D2195_22080) - 4221082..4221759 (-) 678 WP_112042006.1 hypothetical protein -
  D2195_RS20525 (D2195_22085) - 4221907..4222587 (-) 681 WP_094122466.1 WYL domain-containing protein -
  D2195_RS20530 (D2195_22090) - 4222790..4223674 (-) 885 WP_212408094.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17630.26 Da        Isoelectric Point: 7.6151

>NTDB_id=274462 D2195_RS20500 WP_001186710.1 4218877..4219353(-) (radC) [Escherichia coli strain CT30]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274462 D2195_RS20500 WP_001186710.1 4218877..4219353(-) (radC) [Escherichia coli strain CT30]
ATGCAACAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTTATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392