Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D2195_RS17630 Genome accession   NZ_CP032078
Coordinates   3628781..3630208 (+) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain CT30     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3623781..3635208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2195_RS17590 (D2195_18900) yeeW 3623965..3624159 (+) 195 WP_000988599.1 DUF5983 family protein -
  D2195_RS17595 (D2195_18905) - 3624205..3624285 (+) 81 Protein_3487 hypothetical protein -
  D2195_RS26675 (D2195_18910) - 3624574..3624747 (-) 174 WP_032082634.1 transposase domain-containing protein -
  D2195_RS26680 (D2195_18915) - 3624774..3624956 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  D2195_RS17610 (D2195_18920) tmaR 3625057..3625386 (-) 330 WP_000450409.1 DUF496 family protein -
  D2195_RS17615 (D2195_18925) yeeA 3625558..3626616 (-) 1059 WP_001200905.1 FUSC family protein -
  D2195_RS17620 (D2195_18930) sbmC 3626814..3627287 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  D2195_RS17625 (D2195_18935) dacD 3627406..3628572 (-) 1167 WP_001369224.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  D2195_RS17630 (D2195_18940) sbcB 3628781..3630208 (+) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  D2195_RS17635 (D2195_18945) tsuB 3630251..3630478 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  D2195_RS17640 (D2195_18950) tsuA 3630492..3631550 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  D2195_RS17645 (D2195_18955) plaP 3631729..3633087 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  D2195_RS17650 (D2195_18960) yoeI 3633077..3633139 (-) 63 WP_010723108.1 membrane protein YoeI -
  D2195_RS17655 (D2195_18965) yeeY 3633354..3634283 (-) 930 WP_052914073.1 LysR substrate-binding domain-containing protein -
  D2195_RS17660 (D2195_18970) yeeZ 3634329..3635153 (-) 825 WP_000754755.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=274456 D2195_RS17630 WP_000980570.1 3628781..3630208(+) (sbcB) [Escherichia coli strain CT30]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=274456 D2195_RS17630 WP_000980570.1 3628781..3630208(+) (sbcB) [Escherichia coli strain CT30]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581