Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D2195_RS17570 Genome accession   NZ_CP032078
Coordinates   3622304..3622780 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain CT30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3617304..3627780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2195_RS17535 (D2195_18840) - 3617594..3618664 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  D2195_RS17540 (D2195_18845) - 3618800..3619483 (+) 684 WP_000775497.1 hypothetical protein -
  D2195_RS17545 - 3619499..3619636 (+) 138 Protein_3477 hypothetical protein -
  D2195_RS17550 (D2195_18855) - 3619690..3620387 (+) 698 Protein_3478 IS1-like element IS1A family transposase -
  D2195_RS17555 (D2195_18860) - 3620404..3620685 (+) 282 Protein_3479 hypothetical protein -
  D2195_RS17560 (D2195_18870) - 3620906..3621727 (+) 822 WP_001234530.1 DUF932 domain-containing protein -
  D2195_RS17565 (D2195_18875) - 3621809..3622288 (+) 480 WP_047634712.1 antirestriction protein -
  D2195_RS17570 (D2195_18880) radC 3622304..3622780 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  D2195_RS17575 (D2195_18885) yeeT 3622843..3623064 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  D2195_RS17580 (D2195_18890) cbeA 3623138..3623506 (+) 369 WP_001285592.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D2195_RS17585 (D2195_18895) cbtA 3623595..3623968 (+) 374 Protein_3485 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  D2195_RS17590 (D2195_18900) yeeW 3623965..3624159 (+) 195 WP_000988599.1 DUF5983 family protein -
  D2195_RS17595 (D2195_18905) - 3624205..3624285 (+) 81 Protein_3487 hypothetical protein -
  D2195_RS26675 (D2195_18910) - 3624574..3624747 (-) 174 WP_032082634.1 transposase domain-containing protein -
  D2195_RS26680 (D2195_18915) - 3624774..3624956 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  D2195_RS17610 (D2195_18920) tmaR 3625057..3625386 (-) 330 WP_000450409.1 DUF496 family protein -
  D2195_RS17615 (D2195_18925) yeeA 3625558..3626616 (-) 1059 WP_001200905.1 FUSC family protein -
  D2195_RS17620 (D2195_18930) sbmC 3626814..3627287 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=274455 D2195_RS17570 WP_001186773.1 3622304..3622780(+) (radC) [Escherichia coli strain CT30]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274455 D2195_RS17570 WP_001186773.1 3622304..3622780(+) (radC) [Escherichia coli strain CT30]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCTGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392