Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D2195_RS09560 Genome accession   NZ_CP032078
Coordinates   2014297..2014902 (+) Length   201 a.a.
NCBI ID   WP_001195017.1    Uniprot ID   -
Organism   Escherichia coli strain CT30     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2009297..2019902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2195_RS26535 - 2009851..2009949 (+) 99 Protein_1880 hypothetical protein -
  D2195_RS09530 (D2195_10195) rsmS 2010002..2010163 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  D2195_RS09535 (D2195_10200) priC 2010177..2010704 (-) 528 WP_000844858.1 primosomal replication protein N'' -
  D2195_RS09540 (D2195_10205) ybaN 2010774..2011151 (+) 378 WP_001188905.1 DUF454 family protein -
  D2195_RS09545 (D2195_10215) apt 2011304..2011855 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  D2195_RS09550 (D2195_10220) dnaX 2011984..2013915 (+) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  D2195_RS09555 (D2195_10225) ybaB 2013968..2014297 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  D2195_RS09560 (D2195_10230) recR 2014297..2014902 (+) 606 WP_001195017.1 recombination mediator RecR Machinery gene
  D2195_RS09565 (D2195_10235) htpG 2015012..2016886 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  D2195_RS09570 (D2195_10245) adk 2017067..2017711 (+) 645 WP_001220233.1 adenylate kinase -
  D2195_RS09575 (D2195_10250) hemH 2017843..2018805 (+) 963 WP_001250105.1 ferrochelatase -
  D2195_RS09580 (D2195_10255) aes 2018802..2019761 (-) 960 WP_000801797.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21972.01 Da        Isoelectric Point: 5.0751

>NTDB_id=274439 D2195_RS09560 WP_001195017.1 2014297..2014902(+) (recR) [Escherichia coli strain CT30]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEHEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=274439 D2195_RS09560 WP_001195017.1 2014297..2014902(+) (recR) [Escherichia coli strain CT30]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACACGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438