Detailed information NTG0274433

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: RGna_RS15345
• Genome accession: NZ_CP027002
• Coordinates: 3101579..3102943 (+)
• Length: 454 a.a.
• NCBI ID: WP_009244963.1
• Uniprot ID: A0A829NTV7
• Organism: Mediterraneibacter gnavus ATCC 29149
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3096579..3107943

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RGna_RS15325 (RGna_15405)	dapF	3097180..3098037 (+)	858	WP_004841684.1	diaminopimelate epimerase	-
RGna_RS15330 (RGna_15410)	-	3098149..3098517 (+)	369	WP_004841688.1	GntR family transcriptional regulator	-
RGna_RS15335 (RGna_15415)	-	3098530..3100971 (+)	2442	WP_004841690.1	ATP-dependent Clp protease ATP-binding subunit	-
RGna_RS15340 (RGna_15420)	-	3101072..3101485 (+)	414	WP_004841691.1	hypothetical protein	-
RGna_RS15345 (RGna_15425)	radA	3101579..3102943 (+)	1365	WP_009244963.1	DNA repair protein RadA	Machinery gene

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49461.39 Da
• Isoelectric Point: 7.5314

>NTDB_id=274433 RGna_RS15345 WP_009244963.1 3101579..3102943(+) (radA) [Mediterraneibacter gnavus ATCC 29149]
MAKGKKSIFFCQNCGHEEAKWLGQCPVCKEWNTFAEEKVSAGLSRGTTAAAKQSKTAEVVPLSQISARDDTRMLTGMKEL
DRVLGGGIVSGSLVLVGGDPGIGKSTLLLQVCQRLSASRKILYISGEESQTQIKLRANRMGSFTDHMLLLCETNLDTIRT
AIERQNPELVIIDSIQTMYNEEVSSAPGSVSQVRESTHVLMQLAKGMGIPIFIVGHVTKEGTVAGPRVLEHMVDTVLYFE
GDRHASYRILRAVKNRFGSTNEIGVFEMRREGLVEVENPSEYMLSGKPENASGSVVACSMEGTRPILIEIQALVCQSNFG
MPRRTAAGTDYNRVNLLMAVLEKRIGLPLSNYDAYVNIAGGIKMNEPAIDLGIIMALVSSYKNRAIDEKMIVFGEVGLSG
EVRAVSMPEQRVAEAKKLGFETCILPKVCLDMVKEIKGIKLLGVGNISDAINLL

Nucleotide

• Length: 1365 bp

>NTDB_id=274433 RGna_RS15345 WP_009244963.1 3101579..3102943(+) (radA) [Mediterraneibacter gnavus ATCC 29149]
ATGGCAAAAGGAAAGAAAAGTATTTTTTTCTGTCAGAATTGCGGACATGAAGAGGCAAAATGGCTGGGGCAATGTCCGGT
TTGTAAAGAATGGAATACATTCGCAGAAGAAAAAGTGAGTGCCGGATTGAGCCGCGGGACAACGGCAGCTGCAAAGCAGA
GTAAAACAGCAGAAGTAGTTCCGCTTTCTCAGATCAGTGCCAGGGATGATACCAGGATGCTGACCGGGATGAAAGAACTG
GATCGGGTGCTTGGAGGAGGTATCGTCTCCGGTTCTCTCGTTCTGGTCGGAGGGGACCCGGGGATTGGAAAATCAACCCT
GTTATTGCAAGTGTGTCAGAGGCTGTCGGCATCAAGAAAAATTTTATATATTTCAGGAGAGGAGTCGCAGACTCAGATCA
AATTGCGTGCAAATCGTATGGGAAGTTTTACAGATCATATGCTGTTGTTATGTGAAACAAATCTGGATACCATACGTACA
GCCATTGAGAGACAAAATCCGGAGCTTGTGATCATTGATTCGATTCAAACGATGTACAATGAAGAAGTATCCTCAGCGCC
GGGAAGTGTTTCGCAGGTAAGAGAATCTACCCATGTGCTGATGCAGCTGGCAAAGGGGATGGGGATTCCGATCTTTATTG
TTGGACATGTGACAAAGGAGGGGACTGTGGCAGGTCCGAGAGTGCTGGAACATATGGTGGATACGGTACTTTATTTTGAG
GGAGACAGACATGCTTCCTATCGGATTCTGCGTGCGGTAAAAAACCGTTTTGGTTCTACCAACGAGATCGGTGTGTTTGA
AATGCGAAGAGAAGGACTGGTAGAAGTGGAAAACCCCTCCGAATATATGCTGAGCGGAAAGCCGGAAAATGCATCTGGTT
CTGTTGTGGCATGCTCTATGGAAGGAACACGTCCGATTCTGATCGAGATTCAGGCGCTGGTCTGCCAGAGTAACTTCGGA
ATGCCAAGAAGAACGGCAGCAGGAACGGATTATAATCGTGTAAATCTTCTGATGGCGGTACTGGAAAAAAGAATTGGACT
GCCGCTGTCAAATTATGATGCCTATGTCAACATTGCCGGAGGGATTAAAATGAATGAACCGGCGATTGATCTGGGAATCA
TCATGGCGCTGGTTTCCAGTTACAAGAACCGGGCGATTGATGAAAAGATGATCGTATTTGGAGAAGTTGGATTAAGCGGA
GAGGTGCGTGCAGTCAGCATGCCGGAACAGCGAGTGGCAGAGGCTAAAAAACTGGGATTTGAGACCTGTATCCTTCCCAA
AGTATGTCTGGATATGGTAAAAGAAATCAAAGGAATCAAACTACTGGGGGTAGGAAATATCAGTGATGCGATAAACCTTC
TGTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-36)

• Subunit ChlI of Mg-chelatase (ChlI) (345-427)

• AAA domain (AAA_25) (70-221)

3D structure

• AlphaFold DB: A0A829NTV7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	56.512	99.78	0.564
radA	Streptococcus mitis NCTC 12261	54.626	100	0.546
radA	Streptococcus pneumoniae Rx1	54.405	100	0.544
radA	Streptococcus pneumoniae D39	54.405	100	0.544
radA	Streptococcus pneumoniae R6	54.405	100	0.544
radA	Streptococcus pneumoniae TIGR4	54.405	100	0.544
radA	Streptococcus mitis SK321	54.185	100	0.542