Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   D2195_RS06030 Genome accession   NZ_CP032078
Coordinates   1250856..1251371 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli strain CT30     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1245856..1256371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2195_RS05985 (D2195_06440) csrA 1246576..1246761 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  D2195_RS06015 (D2195_06470) yqaB 1248086..1248652 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  D2195_RS06020 (D2195_06475) yqaA 1248649..1249077 (+) 429 WP_001287454.1 YqaA family protein -
  D2195_RS06025 (D2195_06480) gshA 1249150..1250706 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  D2195_RS06030 (D2195_06485) luxS 1250856..1251371 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  D2195_RS06035 (D2195_06490) emrB 1251435..1252973 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  D2195_RS06040 (D2195_06495) emrA 1252990..1254162 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  D2195_RS06045 (D2195_06500) emrR 1254289..1254819 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  D2195_RS06050 (D2195_06505) ygaH 1254910..1255245 (-) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  D2195_RS06055 (D2195_06510) ygaZ 1255235..1255972 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=274425 D2195_RS06030 WP_001130208.1 1250856..1251371(+) (luxS) [Escherichia coli strain CT30]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=274425 D2195_RS06030 WP_001130208.1 1250856..1251371(+) (luxS) [Escherichia coli strain CT30]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737