Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D2195_RS04295 Genome accession   NZ_CP032078
Coordinates   882749..883225 (-) Length   158 a.a.
NCBI ID   WP_001186744.1    Uniprot ID   -
Organism   Escherichia coli strain CT30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 877749..888225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2195_RS04255 (D2195_04610) gspL 878184..879362 (+) 1179 WP_000097200.1 type II secretion system protein GspL -
  D2195_RS04260 (D2195_04615) yghD 879364..879900 (+) 537 WP_000942807.1 GspM family type II secretion system protein YghD -
  D2195_RS04265 (D2195_04620) - 880180..881022 (-) 843 WP_039004748.1 DUF4942 domain-containing protein -
  D2195_RS04270 (D2195_04625) - 881107..881304 (-) 198 WP_023563519.1 DUF957 domain-containing protein -
  D2195_RS04275 (D2195_04630) - 881380..881529 (-) 150 Protein_851 DUF5983 family protein -
  D2195_RS04280 (D2195_04635) - 881526..881903 (-) 378 WP_057109034.1 TA system toxin CbtA family protein -
  D2195_RS04285 (D2195_04640) - 881993..882361 (-) 369 WP_001389198.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D2195_RS04290 (D2195_04645) - 882441..882662 (-) 222 WP_000692287.1 DUF987 domain-containing protein -
  D2195_RS04295 (D2195_04650) radC 882749..883225 (-) 477 WP_001186744.1 RadC family protein Machinery gene
  D2195_RS04300 (D2195_04655) - 883241..883726 (-) 486 WP_000213717.1 antirestriction protein -
  D2195_RS04305 (D2195_04660) - 883803..884621 (-) 819 WP_001175170.1 DUF932 domain-containing protein -
  D2195_RS04310 (D2195_04665) - 884711..884944 (-) 234 WP_001278288.1 DUF905 family protein -
  D2195_RS04315 (D2195_04670) - 884950..885627 (-) 678 WP_001097362.1 hypothetical protein -
  D2195_RS04320 (D2195_04675) - 885746..886630 (-) 885 WP_000010399.1 GTPase -
  D2195_RS04325 (D2195_04680) - 886737..887723 (+) 987 WP_001389197.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17704.29 Da        Isoelectric Point: 6.9859

>NTDB_id=274418 D2195_RS04295 WP_001186744.1 882749..883225(-) (radC) [Escherichia coli strain CT30]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274418 D2195_RS04295 WP_001186744.1 882749..883225(-) (radC) [Escherichia coli strain CT30]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TAGAGCGTGAAGAATTCCGGGTGCTGTACCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACAGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAGGTGATTAAACGCGCCCTGTACCACAATGCCGCCGCCGTGGTACTGGCACA
CAATCACCCGTCAGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTTCAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGTTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.252

65.19

0.38