Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NMCC_RS02420 Genome accession   NC_010120
Coordinates   481152..481433 (+) Length   93 a.a.
NCBI ID   WP_002245932.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 476152..486433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS02375 (NMCC_0455) - 476616..477038 (+) 423 WP_002239831.1 hypothetical protein -
  NMCC_RS02380 (NMCC_0456) - 477075..477476 (+) 402 WP_002240330.1 DUF596 domain-containing protein -
  NMCC_RS02385 (NMCC_0457) - 477599..478214 (+) 616 Protein_434 hypothetical protein -
  NMCC_RS02395 (NMCC_0458) - 478217..479152 (+) 936 WP_012221329.1 immunity 49 family protein -
  NMCC_RS14370 - 479715..479918 (+) 204 WP_033908561.1 hypothetical protein -
  NMCC_RS02415 (NMCC_0460) - 480482..480940 (+) 459 WP_002222917.1 hypothetical protein -
  NMCC_RS13475 - 480939..481073 (+) 135 Protein_438 IS1595 family transposase -
  NMCC_RS02420 comA 481152..481433 (+) 282 WP_002245932.1 ATP-binding cassette domain-containing protein Regulator
  NMCC_RS02425 (NMCC_0461) - 481454..482680 (-) 1227 WP_002217875.1 YihY family inner membrane protein -
  NMCC_RS14930 - 482835..483021 (+) 187 Protein_441 NAD(P)H-quinone oxidoreductase -
  NMCC_RS02435 (NMCC_0462) queC 483225..483887 (+) 663 WP_012221332.1 7-cyano-7-deazaguanine synthase QueC -
  NMCC_RS02440 (NMCC_0463) - 483915..484433 (+) 519 WP_002222913.1 DUF1543 domain-containing protein -
  NMCC_RS02445 (NMCC_0464) queD 484440..484862 (+) 423 WP_002214424.1 6-carboxytetrahydropterin synthase QueD -
  NMCC_RS02450 (NMCC_0465) - 485131..485502 (+) 372 WP_017629259.1 DUF1304 domain-containing protein -
  NMCC_RS02455 (NMCC_0466) - 485499..486137 (+) 639 WP_002242349.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10144.82 Da        Isoelectric Point: 6.2138

>NTDB_id=27435 NMCC_RS02420 WP_002245932.1 481152..481433(+) (comA) [Neisseria meningitidis 053442]
MIHEEICAMPMGYETLIGDMGSALSGGQKQRIVLARALYCEPKILFLDEATSHLDIANEKAVNANLNGLSIIKIMAAHRK
ETVESADRKMSLG

Nucleotide


Download         Length: 282 bp        

>NTDB_id=27435 NMCC_RS02420 WP_002245932.1 481152..481433(+) (comA) [Neisseria meningitidis 053442]
ATGATTCACGAAGAAATCTGCGCCATGCCTATGGGCTATGAAACCTTGATCGGCGATATGGGCAGCGCACTGTCAGGCGG
ACAAAAACAACGCATCGTATTGGCGCGGGCCTTATATTGCGAACCGAAAATCCTATTTTTAGATGAAGCGACCAGCCATT
TGGATATTGCCAATGAAAAAGCAGTCAATGCAAACTTGAATGGCTTGTCTATCATAAAAATTATGGCGGCACACAGAAAG
GAAACGGTGGAATCAGCAGATAGGAAAATGTCTTTAGGATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(15-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis SK321

46.154

97.849

0.452
  comA Streptococcus mitis NCTC 12261

45.055

97.849

0.441
  comA Streptococcus pneumoniae Rx1

45.055

97.849

0.441
  comA Streptococcus pneumoniae D39

45.055

97.849

0.441
  comA Streptococcus pneumoniae TIGR4

45.055

97.849

0.441
  comA Streptococcus pneumoniae R6

45.055

97.849

0.441
  comA/nlmT Streptococcus mutans UA159

47.126

93.548

0.441
  comA Streptococcus gordonii str. Challis substr. CH1

43.956

97.849

0.43

Multiple sequence alignment