Detailed information NTG0274341

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D2194_RS05010
• Genome accession: NZ_CP032073
• Coordinates: 1032883..1033875 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CT29
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1027883..1038875

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2194_RS04980 (D2194_05440)	ispD	1027944..1028654 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D2194_RS04985 (D2194_05445)	ispF	1028654..1029133 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D2194_RS04990 (D2194_05450)	truD	1029130..1030179 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
D2194_RS04995 (D2194_05455)	surE	1030160..1030921 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
D2194_RS05000 (D2194_05460)	pcm	1030915..1031541 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
D2194_RS05005 (D2194_05465)	nlpD	1031726..1032820 (+)	1095	WP_306307598.1	murein hydrolase activator NlpD	-
D2194_RS05010 (D2194_05470)	rpoS	1032883..1033875 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
D2194_RS05015 (D2194_05475)	ygbN	1033969..1035333 (-)	1365	WP_000104441.1	GntP family transporter	-
D2194_RS05020 (D2194_05480)	ygbM	1035422..1036198 (-)	777	WP_212403291.1	HPr family phosphocarrier protein	-
D2194_RS05025 (D2194_05485)	ygbL	1036203..1036841 (-)	639	WP_001278994.1	aldolase	-
D2194_RS05030 (D2194_05490)	otnK	1036838..1038100 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=274341 D2194_RS05010 WP_000081550.1 1032883..1033875(+) (rpoS) [Escherichia coli strain CT29]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=274341 D2194_RS05010 WP_000081550.1 1032883..1033875(+) (rpoS) [Escherichia coli strain CT29]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715