Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D2194_RS04630 Genome accession   NZ_CP032073
Coordinates   964913..965389 (+) Length   158 a.a.
NCBI ID   WP_001366830.1    Uniprot ID   -
Organism   Escherichia coli strain CT29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 959913..970389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2194_RS04600 (D2194_05035) - 960529..961473 (-) 945 WP_032216516.1 hypothetical protein -
  D2194_RS04605 (D2194_05040) - 961579..962463 (+) 885 WP_032216515.1 GTPase -
  D2194_RS04610 (D2194_05045) - 962582..963259 (+) 678 WP_063091580.1 hypothetical protein -
  D2194_RS04615 (D2194_05050) - 963265..963417 (+) 153 WP_001696589.1 DUF905 family protein -
  D2194_RS04620 (D2194_05055) - 963518..964336 (+) 819 WP_001234688.1 DUF932 domain-containing protein -
  D2194_RS04625 (D2194_05060) - 964418..964897 (+) 480 WP_000860074.1 antirestriction protein -
  D2194_RS04630 (D2194_05065) radC 964913..965389 (+) 477 WP_001366830.1 RadC family protein Machinery gene
  D2194_RS04635 (D2194_05070) - 965452..965673 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  D2194_RS04640 (D2194_05075) - 965692..966336 (+) 645 WP_045146861.1 hypothetical protein -
  D2194_RS04645 (D2194_05080) - 966386..966754 (+) 369 WP_063112944.1 type IV toxin-antitoxin system YeeU family antitoxin -
  D2194_RS04650 (D2194_05085) - 966844..967221 (+) 378 WP_057109034.1 TA system toxin CbtA family protein -
  D2194_RS04655 (D2194_05090) - 967218..967367 (+) 150 Protein_927 DUF5983 family protein -
  D2194_RS04660 (D2194_05095) - 967443..967640 (+) 198 WP_023563519.1 DUF957 domain-containing protein -
  D2194_RS04665 (D2194_05100) - 967725..968567 (+) 843 WP_001529559.1 DUF4942 domain-containing protein -
  D2194_RS04670 (D2194_05105) yghD 968849..969385 (-) 537 WP_000942785.1 GspM family type II secretion system protein YghD -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17729.34 Da        Isoelectric Point: 7.2519

>NTDB_id=274337 D2194_RS04630 WP_001366830.1 964913..965389(+) (radC) [Escherichia coli strain CT29]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274337 D2194_RS04630 WP_001366830.1 964913..965389(+) (radC) [Escherichia coli strain CT29]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment