Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D2J89_RS17105 Genome accession   NZ_CP032066
Coordinates   3608030..3608506 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain E166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3603030..3613506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2J89_RS17055 (D2J89_18360) sbmC 3603523..3603996 (+) 474 WP_097501048.1 DNA gyrase inhibitor SbmC -
  D2J89_RS17060 (D2J89_18365) yeeA 3604194..3605252 (+) 1059 WP_001200905.1 FUSC family protein -
  D2J89_RS17065 (D2J89_18370) tmaR 3605424..3605753 (+) 330 WP_000450409.1 DUF496 family protein -
  D2J89_RS17070 (D2J89_18375) - 3605854..3606036 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  D2J89_RS17075 (D2J89_18380) - 3606090..3606236 (+) 147 Protein_3356 transposase domain-containing protein -
  D2J89_RS17080 (D2J89_18385) - 3606525..3606605 (-) 81 Protein_3357 hypothetical protein -
  D2J89_RS17085 (D2J89_18390) yeeW 3606651..3606845 (-) 195 WP_000988600.1 DUF5983 family protein -
  D2J89_RS17090 (D2J89_18395) cbtA 3606842..3607215 (-) 374 Protein_3359 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  D2J89_RS17095 (D2J89_18400) cbeA 3607304..3607672 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D2J89_RS17100 (D2J89_18405) yeeT 3607746..3607967 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  D2J89_RS17105 (D2J89_18410) radC 3608030..3608506 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  D2J89_RS17110 (D2J89_18415) - 3608522..3609001 (-) 480 WP_021525716.1 antirestriction protein -
  D2J89_RS17115 (D2J89_18420) - 3609083..3609904 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  D2J89_RS17120 (D2J89_18430) - 3610125..3610535 (-) 411 WP_000846713.1 hypothetical protein -
  D2J89_RS17125 (D2J89_18435) - 3610551..3611234 (-) 684 WP_000775500.1 hypothetical protein -
  D2J89_RS17130 (D2J89_18440) - 3611370..3612440 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  D2J89_RS17135 (D2J89_18445) - 3612437..3613342 (-) 906 WP_000203555.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=274305 D2J89_RS17105 WP_001186773.1 3608030..3608506(-) (radC) [Escherichia coli strain E166]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274305 D2J89_RS17105 WP_001186773.1 3608030..3608506(-) (radC) [Escherichia coli strain E166]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392