Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   D2J89_RS17045 Genome accession   NZ_CP032066
Coordinates   3600602..3602029 (-) Length   475 a.a.
NCBI ID   WP_001402309.1    Uniprot ID   -
Organism   Escherichia coli strain E166     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3595602..3607029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2J89_RS17015 (D2J89_18320) yeeZ 3595657..3596481 (+) 825 WP_000754749.1 SDR family oxidoreductase -
  D2J89_RS17020 (D2J89_18325) yeeY 3596527..3597456 (+) 930 WP_212406990.1 LysR substrate-binding domain-containing protein -
  D2J89_RS17025 (D2J89_18330) yoeI 3597671..3597733 (+) 63 WP_010723108.1 membrane protein YoeI -
  D2J89_RS17030 (D2J89_18335) plaP 3597723..3599081 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  D2J89_RS17035 (D2J89_18340) tsuA 3599260..3600318 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  D2J89_RS17040 (D2J89_18345) tsuB 3600332..3600559 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  D2J89_RS17045 (D2J89_18350) sbcB 3600602..3602029 (-) 1428 WP_001402309.1 exodeoxyribonuclease I Machinery gene
  D2J89_RS17050 (D2J89_18355) dacD 3602238..3603404 (+) 1167 WP_000830150.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  D2J89_RS17055 (D2J89_18360) sbmC 3603523..3603996 (+) 474 WP_097501048.1 DNA gyrase inhibitor SbmC -
  D2J89_RS17060 (D2J89_18365) yeeA 3604194..3605252 (+) 1059 WP_001200905.1 FUSC family protein -
  D2J89_RS17065 (D2J89_18370) tmaR 3605424..3605753 (+) 330 WP_000450409.1 DUF496 family protein -
  D2J89_RS17070 (D2J89_18375) - 3605854..3606036 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  D2J89_RS17075 (D2J89_18380) - 3606090..3606236 (+) 147 Protein_3356 transposase domain-containing protein -
  D2J89_RS17080 (D2J89_18385) - 3606525..3606605 (-) 81 Protein_3357 hypothetical protein -
  D2J89_RS17085 (D2J89_18390) yeeW 3606651..3606845 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54498.80 Da        Isoelectric Point: 5.6102

>NTDB_id=274304 D2J89_RS17045 WP_001402309.1 3600602..3602029(-) (sbcB) [Escherichia coli strain E166]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFEYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLNNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=274304 D2J89_RS17045 WP_001402309.1 3600602..3602029(-) (sbcB) [Escherichia coli strain E166]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGAATATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCAATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579