Detailed information NTG0274291

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D2J89_RS13690
• Genome accession: NZ_CP032066
• Coordinates: 2871644..2872636 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain E166
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2866644..2877636

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D2J89_RS13660 (D2J89_14795)	ispD	2866705..2867415 (+)	711	WP_000246133.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
D2J89_RS13665 (D2J89_14800)	ispF	2867415..2867894 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D2J89_RS13670 (D2J89_14805)	truD	2867891..2868940 (+)	1050	WP_000568955.1	tRNA pseudouridine(13) synthase TruD	-
D2J89_RS13675 (D2J89_14810)	surE	2868921..2869682 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
D2J89_RS13680 (D2J89_14815)	pcm	2869676..2870302 (+)	627	WP_000254701.1	protein-L-isoaspartate O-methyltransferase	-
D2J89_RS13685 (D2J89_14820)	nlpD	2870487..2871581 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
D2J89_RS13690 (D2J89_14825)	rpoS	2871644..2872636 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
D2J89_RS13695 (D2J89_14830)	-	2872757..2873164 (-)	408	WP_001208064.1	MarR family transcriptional regulator	-
D2J89_RS13700 (D2J89_14835)	-	2873311..2873904 (+)	594	WP_000767730.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
D2J89_RS13705 (D2J89_14840)	-	2873904..2875331 (+)	1428	WP_000863185.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
D2J89_RS13710 (D2J89_14845)	-	2875342..2875578 (+)	237	WP_000562976.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
D2J89_RS13715 (D2J89_14850)	ygbN	2875616..2876980 (-)	1365	WP_000104432.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=274291 D2J89_RS13690 WP_000081550.1 2871644..2872636(+) (rpoS) [Escherichia coli strain E166]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=274291 D2J89_RS13690 WP_000081550.1 2871644..2872636(+) (rpoS) [Escherichia coli strain E166]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715