Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D2J89_RS08715 Genome accession   NZ_CP032066
Coordinates   1819130..1819798 (+) Length   222 a.a.
NCBI ID   WP_001318112.1    Uniprot ID   -
Organism   Escherichia coli strain E166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1814130..1824798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2J89_RS08685 (D2J89_09430) yicC 1814149..1815012 (-) 864 WP_000621330.1 YicC/YloC family endoribonuclease -
  D2J89_RS08690 (D2J89_09440) rph 1815139..1815855 (+) 717 WP_001247093.1 ribonuclease PH -
  D2J89_RS08695 (D2J89_09445) pyrE 1815921..1816562 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  D2J89_RS08700 (D2J89_09450) slmA 1816599..1817195 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  D2J89_RS08705 (D2J89_09455) dut 1817302..1817760 (-) 459 WP_000976070.1 dUTP diphosphatase -
  D2J89_RS08710 (D2J89_09460) coaBC 1817738..1818958 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D2J89_RS08715 (D2J89_09465) radC 1819130..1819798 (+) 669 WP_001318112.1 DNA repair protein RadC Machinery gene
  D2J89_RS08720 (D2J89_09470) rpmB 1820015..1820251 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  D2J89_RS08725 (D2J89_09475) rpmG 1820272..1820439 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  D2J89_RS08730 (D2J89_09480) mutM 1820537..1821346 (+) 810 WP_001114537.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  D2J89_RS08735 (D2J89_09485) coaD 1821385..1821864 (-) 480 WP_001171866.1 pantetheine-phosphate adenylyltransferase -
  D2J89_RS08740 (D2J89_09490) waaA 1821872..1823149 (-) 1278 WP_000891562.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  D2J89_RS08745 (D2J89_09495) rfaQ 1823562..1824620 (+) 1059 WP_000360409.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25286.36 Da        Isoelectric Point: 7.9755

>NTDB_id=274271 D2J89_RS08715 WP_001318112.1 1819130..1819798(+) (radC) [Escherichia coli strain E166]
MKNNAQLLMPREKMLRFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=274271 D2J89_RS08715 WP_001318112.1 1819130..1819798(+) (radC) [Escherichia coli strain E166]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAGGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAGTTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCTTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(9-77)

RadC-like JAB domain (RadC)

(103-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496