Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D2J89_RS08430 Genome accession   NZ_CP032066
Coordinates   1757225..1757701 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain E166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1752225..1762701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2J89_RS08390 (D2J89_09110) yicL 1752414..1753337 (-) 924 WP_000535959.1 carboxylate/amino acid/amine transporter -
  D2J89_RS08395 (D2J89_09115) - 1753504..1754001 (-) 498 WP_000509808.1 hypothetical protein -
  D2J89_RS08400 (D2J89_09125) - 1754597..1755439 (-) 843 WP_001696593.1 DUF4942 domain-containing protein -
  D2J89_RS08405 (D2J89_09130) - 1755524..1755721 (-) 198 WP_086795284.1 DUF957 domain-containing protein -
  D2J89_RS08410 (D2J89_09135) - 1755797..1755946 (-) 150 Protein_1650 DUF5983 family protein -
  D2J89_RS08415 (D2J89_09140) - 1755943..1756320 (-) 378 WP_000854694.1 TA system toxin CbtA family protein -
  D2J89_RS08420 (D2J89_09145) cbeA 1756410..1756778 (-) 369 WP_065793167.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  D2J89_RS08425 (D2J89_09150) - 1756941..1757162 (-) 222 WP_000692303.1 DUF987 domain-containing protein -
  D2J89_RS08430 (D2J89_09155) radC 1757225..1757701 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  D2J89_RS08435 (D2J89_09160) - 1757717..1758196 (-) 480 WP_021525716.1 antirestriction protein -
  D2J89_RS08440 (D2J89_09165) - 1758278..1759096 (-) 819 WP_001175148.1 DUF932 domain-containing protein -
  D2J89_RS08445 (D2J89_09170) - 1759186..1759419 (-) 234 WP_001278287.1 DUF905 family protein -
  D2J89_RS08450 (D2J89_09175) - 1759425..1760102 (-) 678 WP_001097305.1 hypothetical protein -
  D2J89_RS08455 (D2J89_09180) - 1760250..1760930 (-) 681 WP_001282919.1 WYL domain-containing protein -
  D2J89_RS08460 (D2J89_09185) - 1761133..1762017 (-) 885 WP_001116802.1 YfjP family GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=274269 D2J89_RS08430 WP_001186773.1 1757225..1757701(-) (radC) [Escherichia coli strain E166]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=274269 D2J89_RS08430 WP_001186773.1 1757225..1757701(-) (radC) [Escherichia coli strain E166]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTACTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392