Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NMCC_RS01100 Genome accession   NC_010120
Coordinates   220753..221721 (-) Length   322 a.a.
NCBI ID   WP_012221190.1    Uniprot ID   -
Organism   Neisseria meningitidis 053442     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 215753..226721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMCC_RS11485 - 217581..217793 (-) 213 WP_003710665.1 hypothetical protein -
  NMCC_RS01080 (NMCC_0210) - 217888..218226 (+) 339 WP_002214902.1 P-II family nitrogen regulator -
  NMCC_RS01085 (NMCC_0211) - 218285..219034 (-) 750 WP_002219911.1 ABC transporter ATP-binding protein -
  NMCC_RS01090 (NMCC_0212) - 219118..219744 (-) 627 WP_002219910.1 FmdE family protein -
  NMCC_RS01095 (NMCC_0213) - 219789..220763 (-) 975 WP_012221189.1 iron chelate uptake ABC transporter family permease subunit -
  NMCC_RS01100 (NMCC_0214) ceuB 220753..221721 (-) 969 WP_012221190.1 ABC transporter permease Machinery gene
  NMCC_RS01105 (NMCC_0215) - 221885..222850 (-) 966 WP_012221191.1 siderophore ABC transporter substrate-binding protein -
  NMCC_RS01115 (NMCC_0216) fetA 224098..226260 (-) 2163 WP_012221192.1 TonB-dependent siderophore receptor FetA/FrpB -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34357.68 Da        Isoelectric Point: 9.6525

>NTDB_id=27425 NMCC_RS01100 WP_012221190.1 220753..221721(-) (ceuB) [Neisseria meningitidis 053442]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGAGQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMLLIRRLPPTAQLMVPLVGIIFGGVIEAVATFIAY
ENEMLQMLGVWQQGDFSGVLLGRYELLWATGILALFAYLIADQLTILGLGEAVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFIGLVVPNIISRLMGDKLRQSLPAVALLGASLVLLCDIVGRVIVFPFEIPVSTVFGVMGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=27425 NMCC_RS01100 WP_012221190.1 220753..221721(-) (ceuB) [Neisseria meningitidis 053442]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTCGG
CGTTGCCGATTTCCGCTGGTCTGATGTGTTTTCGCTGTCGGACAGCCAGCAAGTGATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTCTGATGCGCAACCGTTTTGTC
GAGCCTTCTATGGCGGGCGCGGGTCAAAGCGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGCTAATCGGAATGCTGGTGTTTATGCTGCTGATCCGCCGTCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGATTGAGGCGGTAGCCACCTTTATCGCGTAT
GAAAACGAAATGCTGCAAATGCTCGGCGTGTGGCAACAGGGCGATTTTTCCGGCGTGTTGCTCGGGCGGTATGAGCTGTT
GTGGGCAACGGGGATTTTGGCTTTGTTTGCCTATTTGATTGCCGACCAGCTGACGATTTTGGGTTTGGGTGAGGCAGTAA
GCGTCAATCTGGGTCTGAACCGGACGGCGGTGTTGTGGTCGGGTTTGATTATTGTGGCACTGATTACATCGCTGGTTATC
GTTACGGTCGGCAATATTCCGTTTATCGGCTTGGTCGTGCCGAACATCATCAGCCGCCTGATGGGCGACAAGCTGCGCCA
AAGCCTGCCTGCGGTGGCCTTACTGGGCGCGTCTTTGGTGTTGCTGTGCGATATTGTCGGACGCGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGCGTGATGGGGACGGCTTTGTTTTTGTGGCTTTTATTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

40.864

93.478

0.382

Multiple sequence alignment