Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D2J89_RS01740 Genome accession   NZ_CP032066
Coordinates   326133..326738 (-) Length   201 a.a.
NCBI ID   WP_001195017.1    Uniprot ID   -
Organism   Escherichia coli strain E166     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 321133..331738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2J89_RS01720 (D2J89_01845) aes 321274..322233 (+) 960 WP_000801797.1 acetyl esterase -
  D2J89_RS01725 (D2J89_01850) hemH 322230..323192 (-) 963 WP_001250105.1 ferrochelatase -
  D2J89_RS01730 (D2J89_01855) adk 323324..323968 (-) 645 WP_001220233.1 adenylate kinase -
  D2J89_RS01735 (D2J89_01865) htpG 324149..326023 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  D2J89_RS01740 (D2J89_01870) recR 326133..326738 (-) 606 WP_001195017.1 recombination mediator RecR Machinery gene
  D2J89_RS01745 (D2J89_01875) ybaB 326738..327067 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  D2J89_RS01750 (D2J89_01880) dnaX 327120..329051 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  D2J89_RS01755 (D2J89_01885) apt 329180..329731 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  D2J89_RS01760 (D2J89_01895) ybaN 329884..330261 (-) 378 WP_001188905.1 DUF454 family protein -
  D2J89_RS01765 (D2J89_01900) priC 330331..330858 (+) 528 WP_000844858.1 primosomal replication protein N'' -
  D2J89_RS01770 (D2J89_01905) rsmS 330872..331033 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  D2J89_RS26045 - 331086..331184 (-) 99 Protein_349 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21972.01 Da        Isoelectric Point: 5.0751

>NTDB_id=274238 D2J89_RS01740 WP_001195017.1 326133..326738(-) (recR) [Escherichia coli strain E166]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEHEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=274238 D2J89_RS01740 WP_001195017.1 326133..326738(-) (recR) [Escherichia coli strain E166]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACACGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

99.005

0.438