Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C5E22_RS19765 Genome accession   NZ_CP026982
Coordinates   4251076..4252458 (+) Length   460 a.a.
NCBI ID   WP_005971086.1    Uniprot ID   A0A1V2R930
Organism   Pectobacterium parmentieri strain IFB5486     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4246076..4257458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5E22_RS19745 (C5E22_19735) - 4247508..4248722 (-) 1215 WP_014698673.1 type II toxin-antitoxin system HipA family toxin -
  C5E22_RS19750 (C5E22_19740) - 4248715..4249026 (-) 312 WP_012822313.1 helix-turn-helix domain-containing protein -
  C5E22_RS19755 (C5E22_19745) - 4249232..4249924 (-) 693 WP_014698672.1 YtjB family periplasmic protein -
  C5E22_RS19760 (C5E22_19750) serB 4250081..4251058 (+) 978 WP_033070853.1 phosphoserine phosphatase -
  C5E22_RS19765 (C5E22_19755) radA 4251076..4252458 (+) 1383 WP_005971086.1 DNA repair protein RadA Machinery gene
  C5E22_RS19770 (C5E22_19760) nadR 4252590..4253843 (+) 1254 WP_033070852.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  C5E22_RS19775 (C5E22_19765) - 4253840..4254481 (-) 642 WP_033071930.1 5-formyltetrahydrofolate cyclo-ligase -
  C5E22_RS19785 (C5E22_19775) zapA 4254780..4255109 (-) 330 WP_005971092.1 cell division protein ZapA -
  C5E22_RS19790 (C5E22_19780) - 4255302..4255889 (+) 588 WP_012822308.1 YecA family protein -
  C5E22_RS19795 (C5E22_19785) pepP 4255951..4257276 (+) 1326 WP_012822307.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49576.13 Da        Isoelectric Point: 7.4218

>NTDB_id=274224 C5E22_RS19765 WP_005971086.1 4251076..4252458(+) (radA) [Pectobacterium parmentieri strain IFB5486]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=274224 C5E22_RS19765 WP_005971086.1 4251076..4252458(+) (radA) [Pectobacterium parmentieri strain IFB5486]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGTGGGGCTGATTACCCACGCTGGCAAGGGCAGTGCAGCGC
CTGCCACGCCTGGAATACCATTACTGAAGTCCGCCTGGCGTCGGCGTCCGTATCACGCTCCGACCGTCTCACCGGCTATG
CGGGTGAGAGTGCAGGTGTCAGCCGGGTGCAAAAACTCTCGGAAATCAGCCTTGAAGCGTTACCCCGCTTTTCCACTGGC
TTTCAGGAATTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCTGGCAGCGCGATCCTGATCGGCGGCAACCCCGGCGCAGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGTAAGCTGTCAGAGAACATGAAAACTCTGTACGTTACCGGGGAAGAATCCT
TGCAGCAGGTCGCGATGCGGGCACACAGGCTCAATCTGCCGACCCAGAATCTCAACATGCTGTCAGAAACCAGCATCGAA
CAAATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTAGCGCAGGTGCGCGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCACTCGCTGGTCCGAAGGTATTGGAACACTGCATCGACTGTTCC
GTGCTGCTGGACGGTGATGCCGATTCCCGTTTCCGCACGCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTCAATGAATT
GGGCGTGTTCGCCATGACGGAACAAGGGCTGCGTGAGATCAGCAATCCATCGGCCATTTTCCTCAGCCGCGGGGATGAAG
TGACGTCCGGTAGCTCGGTCATGGTGGTGTGGGAAGGTACACGCCCGCTGTTGGTTGAGATTCAGGCACTGGTAGATCAA
TCAATGATGGCTAACCCACGTCGCGTTGCCGTCGGATTAGAGCAAAACCGCCTGGCGATCCTGCTGGCAGTACTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTGAACGTCGTCGGCGGCGTCAAAGTGACCGAAACCAGTGCCG
ATCTGGCGCTGCTGCTATCGCTGGTTTCCAGCTTCCGCGACCGCCCGCTGCCGCAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCTGGCGAAATTCGTCCGGTTCCCAGCGGACAAGAGCGCATTACCGAGGCCGCCAAACACGGTTTTAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCAGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2R930

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426

Multiple sequence alignment