Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   D2E16_RS09080 Genome accession   NZ_CP032064
Coordinates   1868916..1869719 (+) Length   267 a.a.
NCBI ID   WP_192369065.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1863916..1874719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS09020 (D2E16_09305) - 1863916..1864716 (-) 801 WP_192369071.1 phage replisome organizer N-terminal domain-containing protein -
  D2E16_RS09025 - 1864700..1864876 (-) 177 WP_153308684.1 hypothetical protein -
  D2E16_RS09030 (D2E16_09310) - 1864879..1865133 (-) 255 WP_192369070.1 hypothetical protein -
  D2E16_RS09035 (D2E16_09315) - 1865135..1865323 (-) 189 WP_044675093.1 hypothetical protein -
  D2E16_RS09040 (D2E16_09320) - 1865320..1865604 (-) 285 WP_044675092.1 hypothetical protein -
  D2E16_RS09045 (D2E16_09325) - 1865855..1866577 (+) 723 WP_192369069.1 hypothetical protein -
  D2E16_RS09050 (D2E16_09330) - 1866570..1866806 (-) 237 WP_192369079.1 hypothetical protein -
  D2E16_RS09055 (D2E16_09335) - 1866887..1867090 (+) 204 WP_004194657.1 hypothetical protein -
  D2E16_RS09060 - 1867059..1867232 (-) 174 WP_192369068.1 hypothetical protein -
  D2E16_RS09065 (D2E16_09340) - 1867246..1867413 (-) 168 WP_414930151.1 helix-turn-helix domain-containing protein -
  D2E16_RS09070 (D2E16_09345) - 1867536..1868348 (+) 813 WP_192369066.1 DUF4393 domain-containing protein -
  D2E16_RS09075 - 1868604..1868768 (-) 165 WP_192369078.1 hypothetical protein -
  D2E16_RS09080 (D2E16_09350) irvR 1868916..1869719 (+) 804 WP_192369065.1 XRE family transcriptional regulator Regulator
  D2E16_RS09085 (D2E16_09355) dinD 1869725..1870570 (+) 846 WP_029172969.1 DNA damage-inducible protein D -
  D2E16_RS09090 (D2E16_09360) - 1870695..1871783 (+) 1089 WP_192369064.1 site-specific integrase -
  D2E16_RS09100 (D2E16_09370) - 1872051..1872521 (+) 471 WP_044765709.1 FeoA family protein -
  D2E16_RS09105 (D2E16_09375) feoB 1872518..1874662 (+) 2145 WP_029178220.1 ferrous iron transport protein B -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30215.27 Da        Isoelectric Point: 5.5263

>NTDB_id=274207 D2E16_RS09080 WP_192369065.1 1868916..1869719(+) (irvR) [Streptococcus suis strain YSJ17]
MVRGRGKLTPQEIELMSVISANINRYLTEQNKKQIDLSRGTGIPPSTLTGYVKGTSLPIPGNVQKIADYFGLKKSDIDPR
FKSTIPSSSIPFPNFDPRKTILLSNYDKLNDTRKNKLLATSETLLAEEQGKIIDISEKRAEYDARKRISLPVPGKVSAGT
GYWQEDDYDTMVDFYADDIPDESKYDTVAVVVGHSMEPKIKNGDFLFIKLKDQVDLNKIGIFQVDGENYVKKLKSDHLES
LNKDYDNIQLSEDLRTIGEVVEVYRER

Nucleotide


Download         Length: 804 bp        

>NTDB_id=274207 D2E16_RS09080 WP_192369065.1 1868916..1869719(+) (irvR) [Streptococcus suis strain YSJ17]
ATGGTTCGCGGTAGAGGAAAATTAACACCGCAAGAAATTGAATTGATGAGCGTGATTTCTGCTAACATCAATAGATATCT
GACGGAACAGAATAAAAAACAAATCGATTTATCAAGGGGGACGGGTATTCCGCCGAGTACATTAACAGGGTATGTGAAAG
GAACATCATTGCCAATTCCTGGTAACGTCCAAAAAATCGCAGATTATTTTGGATTGAAGAAATCGGATATAGACCCACGG
TTTAAATCCACAATCCCTTCTTCTTCCATCCCTTTTCCCAACTTCGACCCACGTAAGACTATTCTGCTATCTAACTATGA
CAAGTTAAACGACACACGCAAGAATAAGCTCCTAGCAACCTCTGAGACCCTTCTAGCCGAAGAGCAAGGGAAAATCATTG
ACATATCAGAAAAACGTGCAGAATACGACGCTAGAAAGCGTATCAGCCTACCCGTACCAGGCAAAGTATCTGCAGGTACA
GGCTACTGGCAAGAAGACGACTACGACACTATGGTTGACTTCTACGCAGACGACATTCCAGACGAAAGCAAGTATGACAC
CGTCGCAGTTGTCGTTGGCCACTCCATGGAACCCAAAATCAAAAACGGCGACTTCCTCTTTATCAAACTCAAGGACCAGG
TAGATCTAAACAAAATCGGCATCTTCCAAGTAGACGGCGAAAACTACGTCAAGAAATTAAAAAGCGACCACTTAGAATCA
CTTAATAAAGATTATGATAATATCCAACTTTCTGAAGACCTAAGAACAATCGGCGAAGTCGTGGAGGTGTATAGGGAGAG
GTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(152-261)

Helix-turn-helix (HTH_3)

(25-73)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

37.086

100

0.419