Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   D2E16_RS07630 Genome accession   NZ_CP032064
Coordinates   1577389..1579602 (-) Length   737 a.a.
NCBI ID   WP_192369302.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1572389..1584602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS07600 (D2E16_07850) - 1572517..1573311 (-) 795 WP_192369303.1 Nif3-like dinuclear metal center hexameric protein -
  D2E16_RS07605 (D2E16_07855) - 1573301..1573984 (-) 684 WP_024377314.1 tRNA (adenine(22)-N(1))-methyltransferase -
  D2E16_RS07610 (D2E16_07860) - 1573986..1574660 (-) 675 WP_024377313.1 DnaD domain-containing protein -
  D2E16_RS07615 (D2E16_07865) metA 1574670..1575611 (-) 942 WP_014637718.1 homoserine O-acetyltransferase MetA -
  D2E16_RS07620 (D2E16_07870) - 1575715..1576227 (-) 513 WP_002937136.1 adenine phosphoribosyltransferase -
  D2E16_RS07625 (D2E16_07875) - 1576325..1577410 (-) 1086 WP_225620768.1 DUF3114 domain-containing protein -
  D2E16_RS07630 (D2E16_07880) recJ 1577389..1579602 (-) 2214 WP_192369302.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  D2E16_RS07635 (D2E16_07885) cls 1579758..1581305 (-) 1548 WP_024377310.1 cardiolipin synthase -
  D2E16_RS07640 (D2E16_07890) - 1581477..1583651 (-) 2175 WP_172010240.1 copper-translocating P-type ATPase -
  D2E16_RS07645 (D2E16_07895) - 1583795..1584550 (-) 756 WP_192369301.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 82542.20 Da        Isoelectric Point: 4.4633

>NTDB_id=274194 D2E16_RS07630 WP_192369302.1 1577389..1579602(-) (recJ) [Streptococcus suis strain YSJ17]
MIKPNYDWQLLTGFSDEQFIKIAKKEGVDPVAAKLLYERGIQSAEALQAFLQPSLEDLHDPYLLHDMDKAVERIRRAIED
YEQILIYGDYDADGMTSASILKETLEEMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQGISLIVTVDNGVAGHEAIAYAQ
EMGVDVVVTDHHSMQETLPNAYAIVHPEHPDGNYPFKHLAGCGVAFKLACALLETVHADLLDLVAIGTIADMVSLTDENR
VMVKYGLSLLKQTERAGLQELIKIAGIDIDSIDEETVGFQLAPRLNALGRLDDPNPAIELLTGFDDEEAHEIALMIDSKN
VERKDIVQAIYDEAKSMLRSDRPVQVLAKEGWNPGVLGIVAGRLLEELHQPVIVLSIEDGKAKGSARSIEAVDIFQALKD
HRDLFIAFGGHAGAAGMTLEVDKLEELALTLTDYIIENKLDLSSKSSLVLDEELDLEELTLDTLKSFEKLAPYGMDNKKP
VFYIREFQVESARTMGQNNAHLKLRITKGAAGFDVVAFGKGNLALEFSQAKGLELAVTLSVNQWNGNTSLQLMLVDARVN
GVQLYNIRGKQHPIPAGVPILDIENPVADNKAIVLANLPEDLSSLRSYFQEREFEAIYFKNEIAKPYYLDGYGSREQFAK
LYKTIYQFDEFDVRYKLKDLAGYLKIKDSLLVKMIQIFQELEFVTITDGVMRVNKEAQKREISESQIYQELKETVIQQEL
MALGTVQEIYEWLCGRV

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=274194 D2E16_RS07630 WP_192369302.1 1577389..1579602(-) (recJ) [Streptococcus suis strain YSJ17]
GTGATAAAACCCAATTATGACTGGCAATTATTAACCGGTTTTTCTGATGAACAATTTATCAAAATTGCTAAAAAAGAAGG
AGTAGACCCGGTAGCGGCTAAGTTGCTGTATGAACGTGGCATCCAGTCGGCGGAAGCTTTGCAAGCTTTTTTACAACCAA
GCTTAGAAGACCTTCACGATCCCTATTTACTACATGATATGGACAAGGCGGTAGAGCGGATTCGCCGAGCAATCGAAGAT
TACGAACAAATTTTGATTTATGGAGATTATGACGCAGACGGCATGACCTCGGCATCTATTCTGAAAGAAACTTTGGAGGA
AATGGGGGCAGAAGTCCAAGTTTATCTTCCCAATCGTTTCACAGATGGTTATGGTCCAAATCAATCTGTTTACAAGTACT
TTATCGAGCAACAGGGGATTTCTCTTATTGTGACGGTGGACAATGGCGTAGCGGGTCATGAAGCGATTGCCTATGCCCAG
GAAATGGGTGTCGATGTTGTCGTGACAGACCACCATTCCATGCAGGAAACCCTTCCCAATGCCTATGCGATTGTACATCC
AGAGCATCCCGATGGAAATTATCCCTTCAAACATTTGGCGGGCTGCGGCGTGGCTTTTAAATTGGCCTGTGCTCTTCTTG
AAACGGTTCATGCAGACTTGCTGGATTTGGTCGCAATTGGCACCATCGCTGATATGGTTAGCTTGACCGATGAGAATCGT
GTCATGGTCAAATATGGTCTCTCGCTTCTCAAACAGACTGAGCGAGCAGGTTTGCAAGAGTTGATAAAGATAGCTGGTAT
TGACATAGACAGTATTGATGAAGAAACAGTTGGTTTCCAACTTGCTCCGAGGTTGAATGCCCTTGGTCGACTCGATGATC
CCAATCCAGCCATCGAACTTCTGACTGGATTTGATGATGAAGAAGCCCATGAGATTGCTCTCATGATTGATAGTAAGAAC
GTCGAGCGCAAGGATATCGTTCAAGCCATCTATGATGAGGCCAAGTCCATGCTTCGTTCTGATAGACCTGTACAAGTCCT
TGCTAAAGAGGGATGGAACCCAGGTGTTCTAGGAATTGTTGCGGGTCGTTTGCTTGAAGAATTACACCAACCCGTCATTG
TTTTGTCCATTGAAGATGGTAAGGCCAAGGGCTCGGCCCGCTCGATTGAGGCTGTGGACATTTTCCAGGCCCTCAAAGAC
CACCGAGACCTCTTTATTGCCTTTGGTGGCCATGCTGGTGCCGCTGGTATGACTTTGGAAGTTGACAAACTTGAAGAGCT
TGCTCTGACCTTGACAGACTACATTATCGAAAATAAATTGGATTTATCCAGCAAGTCTTCGCTGGTCTTAGATGAAGAAT
TGGATTTAGAGGAATTAACCCTAGATACTCTAAAATCTTTCGAGAAGCTTGCGCCTTACGGCATGGATAATAAAAAGCCT
GTATTCTACATCAGAGAATTTCAGGTGGAATCAGCAAGAACCATGGGGCAGAATAATGCCCATTTGAAACTACGCATTAC
TAAAGGTGCTGCAGGATTTGATGTCGTTGCTTTTGGTAAGGGCAATCTAGCCTTGGAATTTTCACAGGCCAAGGGCTTAG
AACTAGCTGTCACCTTGTCTGTCAATCAATGGAATGGCAATACCAGTCTTCAGCTCATGTTGGTCGATGCTCGGGTCAAT
GGTGTTCAACTTTATAATATTCGTGGAAAGCAACATCCTATTCCTGCAGGAGTCCCAATTTTGGACATTGAAAATCCAGT
AGCAGATAACAAAGCAATTGTCTTGGCTAACTTGCCTGAGGACCTCAGTAGTCTGCGTAGCTATTTTCAGGAAAGAGAAT
TTGAAGCCATTTATTTTAAAAATGAAATTGCCAAACCGTACTATCTAGATGGTTATGGTAGCCGAGAACAATTCGCTAAA
TTGTATAAAACCATTTACCAATTTGATGAGTTTGATGTTCGCTATAAACTGAAAGATTTAGCTGGTTACTTAAAAATTAA
GGACAGTCTATTGGTTAAAATGATTCAGATTTTTCAAGAATTAGAATTTGTCACGATTACGGATGGGGTCATGCGGGTCA
ACAAAGAGGCACAGAAGCGAGAGATTTCAGAAAGTCAAATATATCAAGAATTGAAAGAAACAGTTATCCAACAAGAGTTG
ATGGCGCTTGGCACCGTTCAGGAAATTTATGAATGGCTATGTGGTCGCGTTTGA

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(588-733)

DHHA1 domain (DHHA1)

(317-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

73.234

99.864

0.731
  recJ Bacillus subtilis subsp. subtilis str. 168

38.503

100

0.391