Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   D2E16_RS06730 Genome accession   NZ_CP032064
Coordinates   1372682..1376332 (-) Length   1216 a.a.
NCBI ID   WP_192369227.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1367682..1381332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS06710 (D2E16_06905) - 1368493..1368999 (-) 507 WP_192369225.1 YkvA family protein -
  D2E16_RS06715 (D2E16_06910) fic 1369032..1369634 (-) 603 WP_192369226.1 protein adenylyltransferase Fic -
  D2E16_RS06720 (D2E16_06915) parE 1369658..1371607 (-) 1950 WP_002935482.1 DNA topoisomerase IV subunit B -
  D2E16_RS06725 (D2E16_06920) plsY 1371750..1372394 (+) 645 WP_024419469.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -
  D2E16_RS06730 (D2E16_06925) rexA 1372682..1376332 (-) 3651 WP_192369227.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  D2E16_RS06735 (D2E16_06930) rexB 1376332..1379597 (-) 3266 Protein_1285 ATP-dependent nuclease subunit B -

Sequence

Protein


Download         Length: 1216 a.a.        Molecular weight: 139744.16 Da        Isoelectric Point: 5.0358

>NTDB_id=274191 D2E16_RS06730 WP_192369227.1 1372682..1376332(-) (rexA) [Streptococcus suis strain YSJ17]
MAFEQFLSAEEIKAVQLAEANSDKQQKRTPEQIEAIYTHGQNVLVSASAGSGKTFVMVQRILDKLKRGVGIDQLFISTFT
VKAAGELKERIEKNLNETIAETTDMELRRHLSTQLADLTKADIGTMDSFTQKLVTTYGYSLGISPQFRILQDETEKASLK
KEVFDQLFAEYLEEDENGTFRKLVRNFSGNRKDNSGFRQVVYQVHDFSQSTSSPTKWLKEQAVQADLYSQERIEQILEQG
FKEKVLDKLYQAADFFRYHVEWGRNDFGSAKYFANVEEVLDLLTGLDSLDQKDLMERVERILLINDQSRGKGLTNANRPK
DEHLIAFKEEYNAGKSQIISGLRDLGQEVYELTLLKDYQVQALPLLVLLRDFVLDFSQAYLDVKIKEAAFEFGDIGHFAI
RILEENADIRQFFQEKYHEVMVDEYQDNNHSQERMLDLLSNGHNRFMVGDIKQSIYRFRQADPMIFQEKFELYQANPQAG
KLILLKENFRSQIEVLEATNAIFTRLMDRQVGEIKYDDTHILVAGSPGQKIAQPKHEMEYFIYDQQDSASSSTDAEEETP
LTAGEIEVVAKEIIRLHNEEGAAFKDITLLVQKRTHNDLIMTIFEKHGIPIVPDGGAASYLQSLEVMIMLDTLRVINNPL
NDYALVALLKSPMFRFDEDELTRISLQAGTGFFYQKIEVAQQASGQHPELMSGELKKKITDFLTILENWRAFAKLHSIYD
LIWKIFNEKFYYDYVGALPNGSKRQANLYALGLRANQFEKTGYKGLSRFIAMIDRALANDKDLADVQEFLPQNAVQLMTI
HKSKGLEFKYVFLMNIDKRFNLEDHYQSVIISRKNGLGIQYLADMKDKVNSPLPQVRVLMNTLPYQNNLQELKIANLSEQ
MRLLYVALTRAEKKLYLVGKGNADKLAEKYDGKKEDGVLAQSTRESMATFQDWILAIDEAFSGEDLHFKKVFVRDEDLTE
EKIGKLILKNKLEDASLKDIRQSEDIAQALEQLSSVQELNERYKAAIELPSLRTPSQIKKIYEPILEQEGMEVMEKYQPK
RTFNLPDFSKKPKITGAQVGSAVHELMQRLDLSWLVTEDTVREALEAVHAEQAVKDKINVQMILDFFDTDLGREILANTD
KLHREAPFASLQTDPVSQENFVLRGIIDGYLLYDDHIVLFDYKTDKYDQPIQLSQRYQAQMQLYAEALKKAYKIDRVDCH
LILLGGERIEVVEVKI

Nucleotide


Download         Length: 3651 bp        

>NTDB_id=274191 D2E16_RS06730 WP_192369227.1 1372682..1376332(-) (rexA) [Streptococcus suis strain YSJ17]
ATGGCTTTTGAACAATTTTTAAGCGCGGAAGAAATCAAGGCTGTGCAGCTGGCGGAAGCCAATTCTGATAAGCAACAAAA
ACGCACACCTGAGCAGATTGAAGCCATCTACACGCACGGTCAGAATGTTCTGGTCTCTGCATCGGCTGGGTCAGGAAAGA
CCTTCGTTATGGTTCAACGGATTTTGGATAAGTTGAAGCGTGGTGTGGGAATCGACCAGCTCTTTATCTCGACCTTTACA
GTCAAAGCGGCTGGTGAGTTGAAGGAGCGGATTGAGAAAAATCTCAATGAAACCATTGCGGAGACGACCGATATGGAATT
GCGCCGGCATTTGTCTACCCAGTTGGCAGATTTGACCAAGGCGGATATTGGGACCATGGACTCTTTTACGCAGAAATTGG
TCACAACCTACGGTTATAGCCTTGGTATTTCTCCGCAGTTTCGGATTTTACAGGATGAGACTGAAAAAGCGAGTCTGAAA
AAAGAGGTTTTTGATCAGCTCTTTGCAGAATATCTCGAAGAGGATGAAAATGGTACATTCCGCAAACTGGTTCGCAATTT
TTCGGGCAACCGCAAGGATAATAGTGGTTTTCGTCAGGTTGTCTATCAGGTGCATGATTTTAGCCAATCGACGAGCAGTC
CAACTAAATGGCTGAAAGAGCAGGCTGTTCAAGCTGATTTGTACAGTCAAGAGCGTATAGAGCAGATCTTAGAGCAGGGT
TTTAAGGAAAAAGTATTAGACAAGCTCTATCAAGCTGCAGATTTCTTCCGCTACCATGTGGAATGGGGCAGAAATGACTT
TGGTTCCGCCAAGTATTTTGCCAATGTGGAAGAAGTCTTGGATTTGCTGACAGGTTTAGATAGTCTGGACCAGAAGGACT
TGATGGAGCGGGTTGAAAGAATCCTTCTCATCAATGACCAGTCCAGAGGTAAGGGCCTGACCAATGCCAATCGACCCAAA
GATGAGCATTTGATAGCCTTTAAAGAAGAATACAATGCTGGCAAGAGCCAGATTATCTCAGGACTTAGAGATTTGGGTCA
GGAAGTTTATGAATTAACCCTGCTGAAAGATTATCAGGTTCAAGCTTTGCCACTGCTTGTATTATTACGTGACTTTGTCT
TGGATTTTTCGCAGGCTTATCTGGATGTCAAAATCAAGGAAGCAGCTTTTGAATTTGGCGATATTGGGCATTTCGCTATT
CGTATTTTAGAAGAAAATGCGGACATTCGCCAGTTTTTCCAAGAAAAATACCACGAAGTCATGGTGGACGAGTACCAGGA
TAACAACCATAGCCAAGAGCGGATGCTGGACCTGCTGTCTAACGGTCACAACCGCTTTATGGTGGGAGACATTAAGCAGT
CCATCTATCGATTCCGTCAGGCAGATCCAATGATTTTCCAAGAGAAATTTGAACTGTACCAGGCAAATCCTCAGGCAGGG
AAATTGATTTTGCTCAAGGAAAACTTCCGTAGTCAGATTGAGGTCTTGGAGGCAACAAATGCGATTTTCACGCGCCTGAT
GGACCGTCAAGTAGGGGAAATCAAGTATGACGACACCCACATCCTAGTGGCTGGTAGTCCTGGTCAAAAAATTGCCCAGC
CCAAGCATGAGATGGAATACTTCATTTACGACCAGCAGGATAGCGCGAGTTCTTCAACGGATGCTGAGGAGGAAACACCT
CTGACTGCTGGTGAAATTGAAGTCGTTGCAAAAGAGATTATTCGTCTTCACAATGAAGAAGGGGCAGCCTTCAAGGACAT
CACTCTTTTGGTGCAAAAACGGACGCACAATGACCTCATTATGACCATTTTTGAAAAACATGGGATTCCTATTGTGCCAG
ATGGCGGAGCAGCCTCCTATCTGCAATCTTTAGAAGTCATGATCATGCTGGATACCTTGCGGGTTATCAATAATCCACTC
AATGACTATGCCTTGGTTGCCCTGCTTAAATCGCCTATGTTCCGATTCGATGAGGATGAACTGACACGGATTTCCTTGCA
GGCTGGGACAGGATTCTTCTATCAAAAAATTGAAGTAGCTCAGCAAGCAAGTGGGCAACATCCTGAACTTATGTCAGGAG
AGTTGAAGAAGAAAATCACGGATTTCTTGACTATTTTGGAAAACTGGCGTGCCTTTGCCAAACTGCATTCTATTTATGAC
CTGATTTGGAAGATTTTCAATGAAAAATTCTACTATGACTATGTCGGCGCTCTTCCAAATGGTAGCAAGCGTCAGGCCAA
TCTATATGCACTAGGTCTGCGTGCCAACCAGTTTGAAAAAACAGGCTACAAGGGCTTGTCCCGCTTCATCGCCATGATTG
ACCGTGCCTTAGCAAACGATAAGGACTTGGCAGATGTACAAGAGTTTCTACCGCAAAATGCTGTACAACTTATGACCATC
CACAAGTCAAAAGGTTTGGAGTTCAAGTATGTCTTCCTCATGAACATCGATAAGCGATTCAACTTGGAAGACCATTACCA
GTCAGTCATCATAAGTCGGAAAAATGGTCTGGGTATCCAATATTTAGCGGATATGAAAGATAAGGTAAATAGCCCATTGC
CTCAGGTGCGAGTCTTAATGAACACTCTACCTTATCAAAATAATCTCCAAGAGCTAAAAATCGCCAATCTTTCAGAACAA
ATGAGGTTGCTTTATGTTGCACTAACGCGTGCTGAGAAGAAGCTGTATCTGGTTGGAAAGGGCAATGCTGACAAGTTAGC
TGAAAAATACGATGGCAAGAAGGAAGATGGCGTACTTGCCCAATCAACACGTGAAAGTATGGCGACCTTCCAAGACTGGA
TTCTAGCCATTGATGAGGCCTTCTCAGGAGAAGACTTGCACTTCAAGAAAGTCTTTGTAAGGGATGAGGATTTGACAGAG
GAGAAGATTGGTAAACTTATATTGAAGAATAAGCTTGAAGACGCCAGCCTTAAAGATATTCGCCAATCAGAAGACATTGC
TCAGGCCTTGGAGCAGTTGTCTTCTGTTCAAGAGTTGAATGAACGCTATAAGGCTGCCATCGAATTGCCAAGTTTAAGGA
CACCGAGTCAGATCAAAAAAATTTATGAACCAATCTTGGAACAAGAAGGCATGGAAGTTATGGAAAAATACCAGCCAAAA
CGGACCTTCAACTTGCCAGATTTCTCCAAGAAACCAAAAATCACTGGAGCCCAAGTCGGTTCAGCAGTGCATGAACTCAT
GCAACGCTTGGATCTGTCTTGGTTGGTGACAGAAGATACGGTAAGAGAAGCCCTAGAAGCTGTTCATGCAGAGCAAGCGG
TTAAAGACAAAATCAATGTTCAGATGATTTTAGATTTCTTTGATACAGACTTAGGAAGAGAAATTCTAGCCAATACGGAC
AAACTCCACCGAGAAGCTCCATTTGCAAGTTTGCAGACAGATCCTGTATCTCAGGAAAACTTTGTCCTGCGTGGAATTAT
CGATGGCTACCTACTGTATGATGATCATATTGTCCTCTTTGATTACAAGACAGACAAATATGACCAACCAATCCAACTCA
GTCAACGTTACCAAGCTCAAATGCAACTCTATGCCGAGGCATTGAAAAAAGCCTACAAGATAGATCGTGTAGACTGCCAT
TTGATTTTGCTTGGTGGGGAGAGAATAGAAGTGGTTGAAGTCAAAATATAG

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-471)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1037-1192)

UvrD-like helicase C-terminal domain (UvrD_C)

(483-897)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

52.085

100

0.524