Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   D2E16_RS06540 Genome accession   NZ_CP032064
Coordinates   1336959..1338695 (-) Length   578 a.a.
NCBI ID   WP_192369451.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1331959..1343695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS06525 (D2E16_06715) - 1332812..1334098 (-) 1287 WP_192369449.1 homoserine dehydrogenase -
  D2E16_RS06530 (D2E16_06720) - 1334203..1335126 (+) 924 WP_105151662.1 polysaccharide deacetylase family protein -
  D2E16_RS06535 (D2E16_06725) rcrQ 1335181..1336950 (-) 1770 WP_192369450.1 ABC transporter ATP-binding protein Regulator
  D2E16_RS06540 (D2E16_06730) rcrP 1336959..1338695 (-) 1737 WP_192369451.1 ABC transporter ATP-binding protein Regulator
  D2E16_RS06545 (D2E16_06735) - 1338771..1339013 (-) 243 WP_012028079.1 KH domain-containing protein -
  D2E16_RS06550 (D2E16_06740) rpsP 1339035..1339307 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  D2E16_RS06555 (D2E16_06745) - 1339432..1339740 (-) 309 WP_192369452.1 DUF4298 domain-containing protein -
  D2E16_RS06560 (D2E16_06750) pcp 1339740..1340387 (-) 648 WP_029188455.1 pyroglutamyl-peptidase I -
  D2E16_RS06565 (D2E16_06755) - 1340384..1341139 (-) 756 WP_079397395.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65088.21 Da        Isoelectric Point: 5.0255

>NTDB_id=274190 D2E16_RS06540 WP_192369451.1 1336959..1338695(-) (rcrP) [Streptococcus suis strain YSJ17]
MNLIWTYLKKYPKWIALDLLGAFLFVVVNLGLPTFLARMIDQGITKNDVSQLYFWAGMMGLIVLLGIVGRVTLAYAAGKL
TTNIVKDIRNDLYEKIQDYSHHEYEQIGVSSLVARMTNDAFVLMQFSEMVLKLGIITPLMMIASVIMTLVTSPSLAWTVA
VAMPFLVFVIFYVATKTRPLSEKQQKRLDTINQYVRENLMGLRVIRAFTREDFQEERFAEVNEEYTETSKKLFNLTGLTE
PLFVQIIIAMIVAIVWFALSPLQDGSLQIGDLVAFIEYSFHALFSFLLFANLFNMYPRMSVSSQRIQEVLDMPISISKNE
DGTTETDTRGYLEFENVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRR
YNLKALRSKIGFIPQKALLFTGTIAENLKYGKMDASLAELHDATDVAQAKEFIESKEEQFDTHLAEGGSNLSGGQKQRLS
IARAIVKQPDIYIFDDSFSALDYKTDAILRSRLKEVTENATVLIVAQRVGTIMDADQIIVLNEGEIVGRGTHNELMESNE
IYREIANSQLNRQSLTEE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=274190 D2E16_RS06540 WP_192369451.1 1336959..1338695(-) (rcrP) [Streptococcus suis strain YSJ17]
ATGAATCTGATTTGGACCTATTTGAAAAAATATCCTAAGTGGATTGCCTTAGACTTGTTGGGTGCCTTCTTATTTGTAGT
GGTAAACTTAGGGTTACCGACATTTTTGGCGAGAATGATTGACCAAGGAATTACAAAGAACGACGTTAGTCAGCTCTATT
TCTGGGCGGGGATGATGGGATTGATTGTCCTGCTCGGTATTGTTGGTCGAGTGACACTTGCCTATGCAGCTGGAAAGTTG
ACTACCAACATCGTCAAAGATATTCGAAATGATCTGTATGAGAAAATTCAGGACTATTCTCATCATGAATATGAGCAGAT
TGGTGTTTCTTCTCTAGTTGCTCGTATGACAAATGATGCTTTTGTGCTGATGCAATTCTCTGAAATGGTCTTGAAACTAG
GTATTATTACCCCCTTGATGATGATTGCTTCTGTCATCATGACCTTGGTAACCAGTCCGAGCTTGGCCTGGACAGTAGCA
GTAGCCATGCCATTTTTGGTTTTCGTCATTTTTTATGTAGCTACTAAAACTCGTCCACTTTCTGAAAAACAACAGAAACG
TTTGGATACTATTAACCAGTATGTTCGTGAAAATCTCATGGGCTTGCGAGTCATTCGTGCCTTTACGCGTGAAGATTTTC
AAGAAGAGCGTTTTGCAGAGGTCAATGAAGAATATACTGAAACATCCAAAAAACTCTTTAACCTGACGGGTCTGACAGAG
CCGCTCTTTGTCCAGATTATCATTGCCATGATTGTGGCTATTGTCTGGTTTGCACTGTCTCCCTTGCAGGATGGTAGTTT
GCAGATTGGTGATTTGGTTGCCTTTATTGAATACAGTTTCCATGCGCTTTTCTCTTTCTTGCTCTTTGCTAACTTGTTTA
ACATGTACCCACGTATGTCGGTATCGAGCCAACGGATTCAGGAAGTCTTGGACATGCCTATTTCCATTTCTAAGAATGAA
GACGGCACAACTGAAACAGACACTCGTGGTTACTTAGAATTTGAAAATGTGACCTTTGCCTACCCTGGTGAAACAGAGTC
GCCTGTGCTGCACAATATTTCCTTCAAAGCTAAGCCTGGTGAAACCATTGCCTTTATCGGTTCGACTGGTTCTGGTAAGT
CTTCCTTGGTCAACTTGATTCCACGTTTCTATGATGTGACACTTGGTCGTATCTTGGTGGACGGTGTGGATGTCAGACGC
TACAATCTGAAGGCACTCCGCAGCAAGATTGGCTTTATTCCGCAGAAAGCTCTGCTATTTACCGGAACTATCGCGGAAAA
CTTAAAGTACGGTAAGATGGATGCTAGTCTTGCAGAACTTCATGATGCGACGGATGTGGCTCAGGCTAAGGAGTTTATCG
AGAGTAAGGAAGAGCAGTTTGACACCCACTTGGCGGAAGGAGGAAGCAACCTTTCAGGTGGTCAGAAGCAGCGTCTGTCC
ATTGCGCGAGCTATTGTTAAACAGCCGGATATTTATATCTTTGATGATTCTTTCTCAGCATTGGATTATAAGACGGATGC
AATTTTGCGGAGTCGTTTGAAGGAAGTGACGGAAAATGCGACGGTGCTAATTGTGGCTCAACGTGTCGGAACCATTATGG
ATGCCGACCAGATTATCGTGCTGAATGAAGGTGAAATCGTTGGTCGCGGTACCCACAATGAATTAATGGAAAGCAATGAG
ATTTATCGAGAAATCGCCAATTCTCAGCTCAACCGTCAATCGTTAACAGAAGAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(20-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.667

100

0.401