Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D2E16_RS06535 Genome accession   NZ_CP032064
Coordinates   1335181..1336950 (-) Length   589 a.a.
NCBI ID   WP_192369450.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1330181..1341950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS06515 (D2E16_06705) murB 1330810..1331715 (-) 906 WP_192369448.1 UDP-N-acetylmuramate dehydrogenase -
  D2E16_RS06520 (D2E16_06710) thrB 1331948..1332808 (-) 861 WP_024419218.1 homoserine kinase -
  D2E16_RS06525 (D2E16_06715) - 1332812..1334098 (-) 1287 WP_192369449.1 homoserine dehydrogenase -
  D2E16_RS06530 (D2E16_06720) - 1334203..1335126 (+) 924 WP_105151662.1 polysaccharide deacetylase family protein -
  D2E16_RS06535 (D2E16_06725) rcrQ 1335181..1336950 (-) 1770 WP_192369450.1 ABC transporter ATP-binding protein Regulator
  D2E16_RS06540 (D2E16_06730) rcrP 1336959..1338695 (-) 1737 WP_192369451.1 ABC transporter ATP-binding protein Regulator
  D2E16_RS06545 (D2E16_06735) - 1338771..1339013 (-) 243 WP_012028079.1 KH domain-containing protein -
  D2E16_RS06550 (D2E16_06740) rpsP 1339035..1339307 (-) 273 WP_002940682.1 30S ribosomal protein S16 -
  D2E16_RS06555 (D2E16_06745) - 1339432..1339740 (-) 309 WP_192369452.1 DUF4298 domain-containing protein -
  D2E16_RS06560 (D2E16_06750) pcp 1339740..1340387 (-) 648 WP_029188455.1 pyroglutamyl-peptidase I -
  D2E16_RS06565 (D2E16_06755) - 1340384..1341139 (-) 756 WP_079397395.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65742.73 Da        Isoelectric Point: 5.7561

>NTDB_id=274189 D2E16_RS06535 WP_192369450.1 1335181..1336950(-) (rcrQ) [Streptococcus suis strain YSJ17]
MKNRSVFTRVWDYLHRYKSSVFLAVFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAVYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVVTLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
LERIFSVLDELDEEDANALELTASLTGQVSFEQVEFGYSEDKPLIRNFTLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNISRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSQSK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=274189 D2E16_RS06535 WP_192369450.1 1335181..1336950(-) (rcrQ) [Streptococcus suis strain YSJ17]
ATGAAGAATAGATCGGTATTTACCCGTGTTTGGGACTATTTGCATCGTTACAAATCTTCTGTATTTTTAGCCGTTTTTCT
AAAGACCATTAGCGCAGTTATGAATGCCTTAGAACCCTTTGTACTGGGGCTTATCATTACAGAATTGACCAAGAATCTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCGTCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGACTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCGTAACCTTGGTTCCAGTGACCTATTTTGG
TTCCAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTCGGTCGATTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATAACT
GCTGACTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTACGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTGCAGTCTGCAAAATCCTCC
CTTGAACGCATCTTTTCAGTCTTAGATGAACTTGACGAAGAAGACGCCAATGCGCTGGAGTTGACAGCTAGTTTGACCGG
ACAAGTCAGTTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGAAACTTTACTCTTGATGTGAAGC
CAGGTGAAATGGTGGCTATCGTTGGACCAACGGGGGCTGGTAAGACAACCCTTATCAACTTGCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGTCAGGATATACGGAATATTTCTCGTCAATCCTACCGTAGTCAATTTGGTAT
GGTCTTGCAGGATGCTTGGCTCTACGAAGGGACCATCAAGGAAAACTTACGTTTTGGTCGTCTGGATGCGACAGATGAGG
AAATTGTGGAAGCTGCCAAAGCAGCAAACGTCGATCATTTTATCCGTACTCTGCCTGGTGGCTACAATATGGAAATGAAC
CAGGAATCCAGTAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCCATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCACCGTCTATCAACTATTCAAGAAGCTGATAAGATTTTGGTCTTGAAAGATGGGCAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGTCAGTTTAGTCA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(21-304)

ABC transporter (ABC_tran)

(366-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.39

100

0.435