Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   D2E16_RS06210 Genome accession   NZ_CP032064
Coordinates   1262649..1263314 (+) Length   221 a.a.
NCBI ID   WP_099877041.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1257649..1268314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS06180 (D2E16_06350) - 1258605..1258745 (+) 141 WP_032499064.1 hypothetical protein -
  D2E16_RS06185 (D2E16_06355) - 1258758..1259141 (+) 384 WP_125070918.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  D2E16_RS06190 (D2E16_06360) - 1259158..1259901 (+) 744 Protein_1179 ABC transporter ATP-binding protein -
  D2E16_RS06195 (D2E16_06365) - 1259910..1261880 (+) 1971 WP_192369479.1 FtsX-like permease family protein -
  D2E16_RS06200 (D2E16_06375) relB 1262115..1262366 (+) 252 WP_029173101.1 type II toxin-antitoxin system RelB family antitoxin -
  D2E16_RS06205 (D2E16_06380) - 1262350..1262607 (+) 258 WP_099877038.1 type II toxin-antitoxin system RelE family toxin -
  D2E16_RS06210 (D2E16_06385) braR 1262649..1263314 (+) 666 WP_099877041.1 response regulator transcription factor Regulator
  D2E16_RS06215 (D2E16_06390) - 1263311..1264252 (+) 942 WP_024378632.1 sensor histidine kinase -
  D2E16_RS06220 (D2E16_06395) - 1264329..1265837 (+) 1509 WP_192369478.1 phosphomannomutase/phosphoglucomutase -
  D2E16_RS06225 (D2E16_06400) xerS 1265907..1266977 (-) 1071 WP_192369477.1 tyrosine recombinase XerS Machinery gene
  D2E16_RS06230 (D2E16_06405) - 1267126..1267560 (+) 435 WP_024415803.1 GNAT family N-acetyltransferase -
  D2E16_RS06235 (D2E16_06410) - 1267596..1268261 (-) 666 WP_024378635.1 SatD family protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25463.22 Da        Isoelectric Point: 4.7792

>NTDB_id=274186 D2E16_RS06210 WP_099877041.1 1262649..1263314(+) (braR) [Streptococcus suis strain YSJ17]
MKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVTEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFIS
SSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSSDLSIDQFQLSLDGRFSNESEQIQLSPTETKILS
ALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFERIHTVRGVGYLVK

Nucleotide


Download         Length: 666 bp        

>NTDB_id=274186 D2E16_RS06210 WP_099877041.1 1262649..1263314(+) (braR) [Streptococcus suis strain YSJ17]
ATGAAAAAAGAGAAGATTTATATTGTTGAAGACGATGAAATGATTGTACAGCTCTTGAAGCAGCATCTGGGAAAATCGTA
TCAGGTGGAAAGTGTGCAGAATTTCCGAGCTGTCAGTCAGGAGGTTACTGAAATCAAACCAGACTTGGTGCTAATGGACA
TTAGCCTGCCTTATTACAACGGCTTTTACTGGACGACGGAAATCCGTAAAACCATGACCATGCCCATTATTTTTATCTCT
TCTAGCGATGATGAGATGAATGCGGTCATGGCTATGAACATGGGTGGCGATGATTTTGTGTCTAAGCCGTTTTCTCTGGG
GATTTTGGATGCCAAAATCGGCGCCTTCCTGCGTAGGGTCAATCAATTCAGCAAATCGAGCGATTTGTCTATCGACCAGT
TCCAGCTTAGTTTAGACGGGCGATTTTCAAACGAATCGGAACAGATTCAATTGTCTCCTACGGAAACCAAGATTTTGTCC
GCCTTGCTAGAAAGACAAGGGCAGATTGTTAGTAAAGAGGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTATTGA
CCAGAATACGCTCAATGTCAACATGACCAGACTGCGTAAGAAGGTGAGCGAGGTCGGTTTTGAACGTATTCATACCGTTC
GTGGCGTGGGGTACTTGGTCAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.727

99.548

0.475