Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   D2E16_RS06120 Genome accession   NZ_CP032064
Coordinates   1246423..1247121 (-) Length   232 a.a.
NCBI ID   WP_024380728.1    Uniprot ID   A0ABT9YTS7
Organism   Streptococcus suis strain YSJ17     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1241423..1252121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS06100 (D2E16_06265) - 1242364..1242723 (+) 360 WP_024380648.1 SAG1252 family conjugative relaxosome accessory protein -
  D2E16_RS06105 (D2E16_06270) mobC 1242733..1243098 (+) 366 WP_024380649.1 plasmid mobilization relaxosome protein MobC -
  D2E16_RS06110 (D2E16_06275) - 1243085..1244950 (+) 1866 WP_136647908.1 SAG1250 family conjugative relaxase -
  D2E16_RS06115 (D2E16_06280) - 1245042..1246412 (-) 1371 WP_136647907.1 sensor histidine kinase -
  D2E16_RS06120 (D2E16_06285) scnR 1246423..1247121 (-) 699 WP_024380728.1 response regulator transcription factor Regulator
  D2E16_RS06125 (D2E16_06290) - 1247324..1247494 (+) 171 WP_044688461.1 lacticin 481 family lantibiotic -
  D2E16_RS06130 (D2E16_06295) - 1247775..1248683 (+) 909 WP_136647906.1 ABC transporter ATP-binding protein -
  D2E16_RS06135 (D2E16_06300) - 1248685..1249440 (+) 756 WP_044675522.1 ABC transporter permease -
  D2E16_RS06140 (D2E16_06305) - 1249437..1250171 (+) 735 WP_044980473.1 ABC transporter permease -
  D2E16_RS06145 (D2E16_06310) - 1250676..1251797 (+) 1122 WP_029178298.1 IS110 family transposase -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26438.77 Da        Isoelectric Point: 5.4504

>NTDB_id=274185 D2E16_RS06120 WP_024380728.1 1246423..1247121(-) (scnR) [Streptococcus suis strain YSJ17]
MDIETPFLTRKILVVDDDIALNNSIREILSVSGFKKIYSAYSISEGIESFINNSIDLIILDVMLPDGKGYLLSKYVRKNS
DIPILFLTAKNEPEDEIQGLQSGGDDFVTKPFLPKILIYRIISLLRRSYKEDSNIIKLDNCIINLGNAIVEKNNEKLSLT
PIEIQIVRKLYDNKNYIVSTEAICDTVWGIDSFGYEKSLMVHIRNIREKIELNPSKPQYLITVKGLGYKLMV

Nucleotide


Download         Length: 699 bp        

>NTDB_id=274185 D2E16_RS06120 WP_024380728.1 1246423..1247121(-) (scnR) [Streptococcus suis strain YSJ17]
ATGGATATAGAAACGCCTTTTTTAACTAGAAAAATATTGGTTGTTGATGATGATATTGCATTAAACAATTCAATAAGGGA
GATACTATCAGTTTCTGGTTTCAAAAAAATATATAGTGCATACAGCATCAGTGAAGGAATAGAGTCTTTTATTAATAATT
CTATTGATTTGATTATATTAGATGTCATGCTTCCAGATGGGAAAGGATATTTACTATCAAAATACGTAAGAAAAAATTCT
GATATTCCAATTCTTTTTCTAACAGCAAAAAATGAACCTGAAGATGAAATTCAAGGGTTACAATCTGGAGGAGATGATTT
CGTTACTAAGCCTTTCCTTCCTAAAATTCTCATTTATCGCATAATTTCGCTTCTCCGTCGGTCGTACAAAGAAGACAGTA
ACATTATTAAATTAGATAATTGCATTATTAATTTAGGGAATGCCATTGTTGAGAAAAATAATGAAAAACTTTCTTTAACC
CCAATAGAAATTCAAATCGTTCGGAAATTATATGATAATAAAAACTATATTGTATCTACAGAGGCGATTTGTGATACCGT
ATGGGGCATTGATAGTTTTGGATATGAAAAGTCTTTAATGGTCCATATCAGAAATATCAGAGAAAAAATCGAACTTAACC
CTTCAAAGCCACAATACTTAATTACTGTTAAAGGACTCGGCTATAAACTAATGGTATAG

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)

Response regulator receiver domain (Response_reg)

(12-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

43.946

96.121

0.422

Multiple sequence alignment