Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   D2E16_RS00205 Genome accession   NZ_CP032064
Coordinates   29085..29867 (+) Length   260 a.a.
NCBI ID   WP_192369280.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24085..34867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS00180 (D2E16_00190) mreC 24095..24931 (+) 837 WP_029177295.1 rod shape-determining protein MreC -
  D2E16_RS00185 (D2E16_00195) mreD 24948..25436 (+) 489 WP_225624610.1 rod shape-determining protein MreD -
  D2E16_RS00190 (D2E16_00200) pcsB 25521..26762 (+) 1242 WP_192369279.1 peptidoglycan hydrolase PcsB -
  D2E16_RS00195 (D2E16_00205) - 26865..27833 (+) 969 WP_002935337.1 ribose-phosphate diphosphokinase -
  D2E16_RS00200 (D2E16_00210) - 27920..29098 (+) 1179 WP_099871382.1 pyridoxal phosphate-dependent aminotransferase -
  D2E16_RS00205 (D2E16_00215) recO 29085..29867 (+) 783 WP_192369280.1 DNA repair protein RecO Machinery gene
  D2E16_RS00210 (D2E16_00220) plsX 29864..30871 (+) 1008 WP_192369281.1 phosphate acyltransferase PlsX -
  D2E16_RS00215 (D2E16_00225) - 30864..31112 (+) 249 WP_172042912.1 phosphopantetheine-binding protein -
  D2E16_RS00220 (D2E16_00230) purC 31230..31937 (+) 708 WP_192369282.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 30527.04 Da        Isoelectric Point: 5.4193

>NTDB_id=274134 D2E16_RS00205 WP_192369280.1 29085..29867(+) (recO) [Streptococcus suis strain YSJ17]
MERIETRGLVLYNRNFREDDKLVKIFTEKAGKRMFFVKHASKFRLVASIQPLTYADFIVKINDDGLSYIEDFHQVQPFKN
INGDIFKLSYATYILALADAALQDKVYDPALFAFLVKTLDLMESGLDYEVLTNIFEIQLLGRFGVSLNFHECAFCHRVGL
PFDYSYKYSGVLCPQHYQQDERRAYLDPNVPYLLDQFQAISFDELETISIKPEMKRKLRLFIDQLYEEYVGIHLKSKKFI
DDLSSWGQIMKPRTENEETE

Nucleotide


Download         Length: 783 bp        

>NTDB_id=274134 D2E16_RS00205 WP_192369280.1 29085..29867(+) (recO) [Streptococcus suis strain YSJ17]
ATGGAACGAATTGAAACCAGAGGATTAGTCCTTTATAATCGGAATTTTCGGGAAGATGATAAGCTGGTCAAGATTTTTAC
GGAGAAGGCTGGCAAGCGAATGTTTTTCGTGAAACATGCCTCTAAGTTCAGGCTGGTAGCTTCTATCCAGCCTTTGACCT
ATGCGGATTTTATCGTCAAAATCAATGATGATGGTCTGTCTTATATCGAAGATTTTCATCAAGTACAGCCATTTAAGAAT
ATTAACGGTGATATTTTCAAGCTTAGCTATGCTACCTACATCTTAGCCTTGGCAGATGCGGCCTTGCAGGACAAGGTTTA
TGATCCGGCTCTCTTTGCTTTTTTGGTCAAGACCTTGGACTTGATGGAGTCGGGTTTGGATTATGAAGTCTTGACCAATA
TCTTTGAAATTCAGCTCTTGGGACGTTTTGGGGTCAGTCTGAATTTCCATGAGTGTGCTTTTTGTCATCGGGTTGGTCTG
CCTTTTGACTATTCCTACAAGTACAGCGGTGTTTTGTGTCCGCAACACTATCAACAAGATGAGCGACGGGCTTATCTGGA
TCCCAATGTTCCCTATCTACTTGATCAATTTCAGGCTATTTCCTTTGATGAGCTAGAAACCATTTCCATCAAGCCTGAGA
TGAAGCGAAAATTACGGCTTTTTATTGACCAGCTGTACGAGGAATATGTGGGGATTCACTTGAAATCCAAGAAATTTATA
GATGATTTGTCTTCTTGGGGGCAGATTATGAAACCAAGAACAGAAAATGAGGAAACAGAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

68.526

96.538

0.662