Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C5E17_RS03020 Genome accession   NZ_CP026977
Coordinates   622248..623630 (-) Length   460 a.a.
NCBI ID   WP_005971086.1    Uniprot ID   A0A1V2R930
Organism   Pectobacterium parmentieri strain IFB5408     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 617248..628630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5E17_RS02990 (C5E17_03000) pepP 617430..618755 (-) 1326 WP_012822307.1 Xaa-Pro aminopeptidase -
  C5E17_RS02995 (C5E17_03005) - 618817..619404 (-) 588 WP_012822308.1 YecA family protein -
  C5E17_RS03000 (C5E17_03010) zapA 619597..619926 (+) 330 WP_005971092.1 cell division protein ZapA -
  C5E17_RS03010 (C5E17_03020) - 620225..620866 (+) 642 WP_033071930.1 5-formyltetrahydrofolate cyclo-ligase -
  C5E17_RS03015 (C5E17_03025) nadR 620863..622116 (-) 1254 WP_033070852.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  C5E17_RS03020 (C5E17_03030) radA 622248..623630 (-) 1383 WP_005971086.1 DNA repair protein RadA Machinery gene
  C5E17_RS03025 (C5E17_03035) serB 623648..624625 (-) 978 WP_033070853.1 phosphoserine phosphatase -
  C5E17_RS03030 (C5E17_03040) - 624782..625474 (+) 693 WP_014698672.1 YtjB family periplasmic protein -
  C5E17_RS03035 (C5E17_03045) - 625680..625991 (+) 312 WP_012822313.1 helix-turn-helix domain-containing protein -
  C5E17_RS03040 (C5E17_03050) - 625984..627198 (+) 1215 WP_014698673.1 type II toxin-antitoxin system HipA family toxin -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49576.13 Da        Isoelectric Point: 7.4218

>NTDB_id=274118 C5E17_RS03020 WP_005971086.1 622248..623630(-) (radA) [Pectobacterium parmentieri strain IFB5408]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=274118 C5E17_RS03020 WP_005971086.1 622248..623630(-) (radA) [Pectobacterium parmentieri strain IFB5408]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGTGGGGCTGATTACCCACGCTGGCAAGGGCAGTGCAGCGC
CTGCCACGCCTGGAATACCATTACTGAAGTCCGCCTGGCGTCGGCGTCCGTATCACGCTCCGACCGTCTCACCGGCTATG
CGGGTGAGAGTGCAGGTGTCAGCCGGGTGCAAAAACTCTCGGAAATCAGCCTTGAAGCGTTACCCCGCTTTTCCACTGGC
TTTCAGGAATTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCTGGCAGCGCGATCCTGATCGGCGGCAACCCCGGCGCAGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGTAAGCTGTCAGAGAACATGAAAACTCTGTACGTTACCGGGGAAGAATCCT
TGCAGCAGGTCGCGATGCGGGCACACAGGCTCAATCTGCCGACCCAGAATCTCAACATGCTGTCAGAAACCAGCATCGAA
CAAATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTAGCGCAGGTGCGCGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCACTCGCTGGTCCGAAGGTATTGGAACACTGCATCGACTGTTCC
GTGCTGCTGGACGGTGATGCCGATTCCCGTTTCCGCACGCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTCAATGAATT
GGGCGTGTTCGCCATGACGGAACAAGGGCTGCGTGAGATCAGCAATCCATCGGCCATTTTCCTCAGCCGCGGGGATGAAG
TGACGTCCGGTAGCTCGGTCATGGTGGTGTGGGAAGGTACACGCCCGCTGTTGGTTGAGATTCAGGCACTGGTAGATCAA
TCAATGATGGCTAACCCACGTCGCGTTGCCGTCGGATTAGAGCAAAACCGCCTGGCGATCCTGCTGGCAGTACTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTGAACGTCGTCGGCGGCGTCAAAGTGACCGAAACCAGTGCCG
ATCTGGCGCTGCTGCTATCGCTGGTTTCCAGCTTCCGCGACCGCCCGCTGCCGCAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCTGGCGAAATTCGTCCGGTTCCCAGCGGACAAGAGCGCATTACCGAGGCCGCCAAACACGGTTTTAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCAGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2R930

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426

Multiple sequence alignment