Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LL267_RS09160 Genome accession   NZ_CP032058
Coordinates   1815218..1815889 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis subsp. lactis strain 267     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1810218..1820889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL267_RS09135 (LL267_1761) pheA 1810523..1811362 (-) 840 WP_014570689.1 prephenate dehydratase -
  LL267_RS09140 (LL267_1762) - 1811364..1811852 (-) 489 WP_003132788.1 shikimate kinase -
  LL267_RS09145 (LL267_1763) aroA 1811876..1813168 (-) 1293 WP_003132786.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  LL267_RS09150 (LL267_1764) - 1813289..1814353 (-) 1065 WP_058221753.1 prephenate dehydrogenase -
  LL267_RS09155 (LL267_1765) - 1814356..1815231 (-) 876 WP_058221754.1 HAMP domain-containing sensor histidine kinase -
  LL267_RS09160 (LL267_1766) braR 1815218..1815889 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  LL267_RS09165 (LL267_1767) - 1815892..1816956 (-) 1065 WP_003132781.1 VanZ family protein -
  LL267_RS09170 (LL267_1768) - 1817137..1819140 (-) 2004 WP_033899972.1 ABC transporter permease -
  LL267_RS09175 (LL267_1769) - 1819133..1819912 (-) 780 WP_003132777.1 ABC transporter ATP-binding protein -
  LL267_RS09180 (LL267_1770) - 1820101..1820460 (-) 360 WP_058221755.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=274094 LL267_RS09160 WP_003132782.1 1815218..1815889(-) (braR) [Lactococcus lactis subsp. lactis strain 267]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=274094 LL267_RS09160 WP_003132782.1 1815218..1815889(-) (braR) [Lactococcus lactis subsp. lactis strain 267]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCTATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCGTTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTTACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413