Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MC81_RS12360 Genome accession   NZ_CP026973
Coordinates   2649867..2651228 (-) Length   453 a.a.
NCBI ID   WP_042797182.1    Uniprot ID   A0A6S7FJW4
Organism   Achromobacter insolitus strain FDAARGOS_88     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2644867..2656228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MC81_RS12335 (MC81_12335) - 2645304..2646317 (+) 1014 WP_042797180.1 tripartite tricarboxylate transporter substrate binding protein -
  MC81_RS12340 (MC81_12340) - 2646384..2647370 (+) 987 WP_104653630.1 tripartite tricarboxylate transporter substrate binding protein -
  MC81_RS12345 (MC81_12345) - 2647473..2648429 (+) 957 WP_042794206.1 2-hydroxyacid dehydrogenase -
  MC81_RS12350 (MC81_12350) - 2648576..2648815 (-) 240 WP_042794207.1 hypothetical protein -
  MC81_RS12355 (MC81_12355) - 2648994..2649773 (-) 780 WP_042794208.1 sulfite exporter TauE/SafE family protein -
  MC81_RS12360 (MC81_12360) radA 2649867..2651228 (-) 1362 WP_042797182.1 DNA repair protein RadA Machinery gene
  MC81_RS12365 (MC81_12365) - 2651653..2652267 (+) 615 WP_042794209.1 hypothetical protein -
  MC81_RS12370 (MC81_12370) hpaR 2652366..2652830 (+) 465 WP_042794210.1 homoprotocatechuate degradation operon regulator HpaR -
  MC81_RS12375 (MC81_12375) hpaD 2652831..2653682 (-) 852 WP_042794211.1 3,4-dihydroxyphenylacetate 2,3-dioxygenase -
  MC81_RS12380 (MC81_12380) hpaE 2653721..2655187 (-) 1467 WP_042794212.1 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48145.26 Da        Isoelectric Point: 6.9553

>NTDB_id=274087 MC81_RS12360 WP_042797182.1 2649867..2651228(-) (radA) [Achromobacter insolitus strain FDAARGOS_88]
MAKSRTVYVCAECGGTTPKWQGKCPHCNAWNTLEETVESSAPAAASHRYAPLAAASPVRSLSEIEARETPRQPTGLEEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSEVTNVLYVTGEESAEQVALRARRLGLQTGNVNLLAEIRLESIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHEQQVAGSCVMATQEGTRPLLVEIQALVDSSHAPN
PRRLTVGLEGNRLAMLLAVLHRHAGVSTFDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPRGLIAFGEVGLAGE
IRPAPRGQERLREAAKLGFSIALIPKANAPRQPIEGLEIWAVDRLDAALDKLR

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=274087 MC81_RS12360 WP_042797182.1 2649867..2651228(-) (radA) [Achromobacter insolitus strain FDAARGOS_88]
ATGGCCAAATCCCGAACCGTATACGTGTGCGCCGAATGTGGCGGCACCACCCCGAAGTGGCAGGGCAAATGCCCGCATTG
CAACGCCTGGAACACGCTGGAAGAAACCGTGGAGTCATCGGCGCCCGCCGCTGCCTCCCATCGCTACGCGCCGCTGGCAG
CCGCCAGCCCGGTGCGCAGCCTGTCCGAAATCGAAGCCCGCGAAACACCGCGCCAGCCTACGGGGCTGGAAGAGTTCGAC
CGCGTCTTGGGCGGCGGCCTGGTGGCCGGCGCCGTCGTGTTGATCGGCGGCGATCCTGGCATCGGTAAATCCACCTTGCT
GTTGCAGGCGCTGGCCTCGTTGTCCGAAGTCACCAACGTTCTGTATGTCACCGGCGAGGAATCCGCCGAGCAGGTCGCCC
TGCGCGCGCGGCGGCTGGGCCTGCAAACCGGCAATGTGAACCTGTTGGCCGAGATCAGGCTGGAGTCGATCCAGGCTGCG
GTGTCGGAGCAGAAGCCCACCGTGGCCGTCATCGACTCGATCCAGACCCTGTACAGCGGCGAGCTGACCGCCGCTCCGGG
CTCGGTCTCGCAGGTGCGCGAATGCGCGGCGCAGCTCACGCGCCTGGCCAAGCAGACGGGCATCGCCATCGTCATGATCG
GCCACGTCACCAAGGACGGCGCGCTGGCCGGGCCGCGGGTGCTGGAGCACATCGTCGATACCGTGTTGTATTTCGAGGGC
GACACGCACTCGTCGTTCCGCCTGGTGCGCGCCTTCAAGAACCGTTTCGGAGCGGTCAACGAGCTGGGCGTCTTCGCCAT
GACGGATCGCGGACTGCGGGGCGTGGCCAATCCGTCCGCGCTGTTCCTGTCGCAGCATGAACAACAGGTCGCGGGTTCCT
GCGTGATGGCCACGCAGGAAGGCACGCGACCGCTGCTGGTGGAAATCCAGGCCTTGGTCGACAGCTCGCACGCGCCCAAT
CCGCGCCGCCTGACCGTGGGCCTGGAAGGCAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGCCGGCGTCTC
CACCTTTGACCAGGACGTCTTCGTCAACGCGGTGGGCGGCGTGCGCATCACCGAGCCCGCGGCCGATTTGCCGGTACTCC
TGGCCATTATGTCTTCGCTGCGGGACAAGCCATTGCCGCGCGGGCTGATTGCCTTCGGCGAAGTCGGCCTGGCAGGCGAA
ATCCGGCCGGCGCCACGCGGGCAGGAACGCTTGCGCGAAGCGGCCAAGCTGGGCTTTTCAATCGCCCTGATTCCCAAGGC
CAATGCGCCGCGCCAGCCCATCGAAGGGCTGGAGATCTGGGCCGTGGACCGGCTGGATGCCGCGCTCGATAAATTGCGCT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6S7FJW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.219

100

0.506
  radA Streptococcus mitis NCTC 12261

47.02

100

0.47
  radA Streptococcus pneumoniae D39

49.296

94.04

0.464
  radA Streptococcus pneumoniae TIGR4

49.296

94.04

0.464
  radA Streptococcus mitis SK321

49.296

94.04

0.464
  radA Streptococcus pneumoniae R6

49.296

94.04

0.464
  radA Streptococcus pneumoniae Rx1

49.296

94.04

0.464

Multiple sequence alignment