Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B9S25_RS25960 Genome accession   NZ_CP031922
Coordinates   4950318..4950794 (-) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli O26:H11 strain FWSEC0001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4945318..4955794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S25_RS25905 (B9S25_027145) nanS 4945425..4946405 (+) 981 WP_000991415.1 sialate O-acetylesterase -
  B9S25_RS25910 (B9S25_027150) - 4946413..4947063 (-) 651 WP_001037966.1 HNH endonuclease -
  B9S25_RS31085 (B9S25_027155) - 4947200..4947343 (+) 144 Protein_5028 restriction endonuclease -
  B9S25_RS31370 (B9S25_027170) - 4948007..4948135 (-) 129 Protein_5029 transcriptional regulator -
  B9S25_RS30415 - 4948111..4948260 (-) 150 Protein_5030 restriction endonuclease subunit M -
  B9S25_RS25935 (B9S25_027175) - 4948345..4948542 (-) 198 WP_000839281.1 DUF957 domain-containing protein -
  B9S25_RS25940 (B9S25_027180) - 4948554..4949042 (-) 489 WP_000777547.1 DUF5983 family protein -
  B9S25_RS25945 (B9S25_027185) - 4949039..4949413 (-) 375 WP_000854753.1 TA system toxin CbtA family protein -
  B9S25_RS25950 (B9S25_027190) - 4949503..4949871 (-) 369 WP_001315620.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B9S25_RS25955 (B9S25_027195) - 4950034..4950255 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  B9S25_RS25960 (B9S25_027200) radC 4950318..4950794 (-) 477 WP_001186774.1 RadC family protein Machinery gene
  B9S25_RS25965 (B9S25_027205) - 4950810..4951295 (-) 486 WP_000849588.1 antirestriction protein -
  B9S25_RS25970 (B9S25_027210) - 4951350..4952168 (-) 819 WP_001234622.1 DUF932 domain-containing protein -
  B9S25_RS25980 (B9S25_027220) - 4952268..4952501 (-) 234 WP_001119729.1 DUF905 family protein -
  B9S25_RS25985 (B9S25_027225) - 4952580..4953035 (-) 456 WP_000581504.1 IrmA family protein -
  B9S25_RS25990 (B9S25_027230) - 4953111..4955627 (-) 2517 WP_023442299.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=273693 B9S25_RS25960 WP_001186774.1 4950318..4950794(-) (radC) [Escherichia coli O26:H11 strain FWSEC0001]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273693 B9S25_RS25960 WP_001186774.1 4950318..4950794(-) (radC) [Escherichia coli O26:H11 strain FWSEC0001]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399