Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   B9S25_RS22845 Genome accession   NZ_CP031922
Coordinates   4300961..4301566 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O26:H11 strain FWSEC0001     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4295961..4306566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S25_RS22825 (B9S25_023865) aes 4295998..4296957 (+) 960 WP_000801832.1 acetyl esterase -
  B9S25_RS22830 (B9S25_023870) hemH 4296954..4297916 (-) 963 WP_001250125.1 ferrochelatase -
  B9S25_RS22835 (B9S25_023875) adk 4298152..4298796 (-) 645 WP_001220233.1 adenylate kinase -
  B9S25_RS22840 (B9S25_023885) htpG 4298977..4300851 (-) 1875 WP_000678194.1 molecular chaperone HtpG -
  B9S25_RS22845 (B9S25_023890) recR 4300961..4301566 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  B9S25_RS22850 (B9S25_023895) ybaB 4301566..4301895 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  B9S25_RS22855 (B9S25_023900) dnaX 4301948..4303879 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  B9S25_RS22860 (B9S25_023905) apt 4304008..4304559 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  B9S25_RS22865 (B9S25_023915) ybaN 4304712..4305089 (-) 378 WP_001188905.1 DUF454 family protein -
  B9S25_RS22870 (B9S25_023920) priC 4305159..4305686 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  B9S25_RS22875 (B9S25_023925) rsmS 4305700..4305861 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=273683 B9S25_RS22845 WP_001195025.1 4300961..4301566(-) (recR) [Escherichia coli O26:H11 strain FWSEC0001]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=273683 B9S25_RS22845 WP_001195025.1 4300961..4301566(-) (recR) [Escherichia coli O26:H11 strain FWSEC0001]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443