Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B9S25_RS19700 Genome accession   NZ_CP031922
Coordinates   3681766..3682395 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli O26:H11 strain FWSEC0001     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3676766..3687395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S25_RS19685 (B9S25_020565) helD 3677008..3679062 (-) 2055 WP_001297106.1 DNA helicase IV -
  B9S25_RS19690 (B9S25_020570) yccF 3679185..3679631 (+) 447 WP_001261235.1 YccF domain-containing protein -
  B9S25_RS19695 (B9S25_020575) yccS 3679641..3681803 (+) 2163 WP_000875023.1 YccS family putative transporter -
  B9S25_RS19700 (B9S25_020580) sxy/tfoX 3681766..3682395 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  B9S25_RS19705 (B9S25_020585) sulA 3682614..3683123 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  B9S25_RS19710 (B9S25_020595) ompA 3683480..3684520 (+) 1041 WP_000750416.1 porin OmpA -
  B9S25_RS19715 (B9S25_020600) matP 3684595..3685047 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  B9S25_RS19720 (B9S25_020605) ycbZ 3685233..3686993 (+) 1761 WP_000156528.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=273676 B9S25_RS19700 WP_000839153.1 3681766..3682395(-) (sxy/tfoX) [Escherichia coli O26:H11 strain FWSEC0001]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=273676 B9S25_RS19700 WP_000839153.1 3681766..3682395(-) (sxy/tfoX) [Escherichia coli O26:H11 strain FWSEC0001]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1