Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C5F72_RS15370 Genome accession   NZ_CP026935
Coordinates   3130711..3131340 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CFS3292     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125711..3136340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5F72_RS15355 (C5F72_16485) helD 3125953..3128007 (-) 2055 WP_159376074.1 DNA helicase IV -
  C5F72_RS15360 (C5F72_16490) yccF 3128130..3128576 (+) 447 WP_001261235.1 YccF domain-containing protein -
  C5F72_RS15365 (C5F72_16495) yccS 3128586..3130748 (+) 2163 WP_000875061.1 YccS family putative transporter -
  C5F72_RS15370 (C5F72_16500) sxy/tfoX 3130711..3131340 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  C5F72_RS15375 (C5F72_16505) sulA 3131559..3132068 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  C5F72_RS15380 (C5F72_16515) ompA 3132425..3133465 (+) 1041 WP_000750416.1 porin OmpA -
  C5F72_RS15385 (C5F72_16520) matP 3133541..3133993 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  C5F72_RS15390 (C5F72_16525) ycbZ 3134179..3135939 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=273675 C5F72_RS15370 WP_000839153.1 3130711..3131340(-) (sxy/tfoX) [Escherichia coli strain CFS3292]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=273675 C5F72_RS15370 WP_000839153.1 3130711..3131340(-) (sxy/tfoX) [Escherichia coli strain CFS3292]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment