Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   B9S25_RS10355 Genome accession   NZ_CP031922
Coordinates   2047549..2048025 (-) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli O26:H11 strain FWSEC0001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2042549..2053025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S25_RS10310 (B9S25_010835) tmaR 2043682..2044011 (+) 330 WP_000450409.1 DUF496 family protein -
  B9S25_RS30825 - 2044112..2044477 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  B9S25_RS30830 - 2044748..2045119 (-) 372 WP_001295631.1 IS110 family transposase -
  B9S25_RS10330 (B9S25_010855) - 2045935..2046015 (-) 81 Protein_2007 hypothetical protein -
  B9S25_RS10335 (B9S25_010860) - 2046115..2046264 (-) 150 Protein_2008 DUF5983 family protein -
  B9S25_RS10340 (B9S25_010865) - 2046261..2046638 (-) 378 WP_000854757.1 TA system toxin CbtA family protein -
  B9S25_RS10345 (B9S25_010870) - 2046728..2047096 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  B9S25_RS10350 (B9S25_010875) yeeT 2047259..2047480 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  B9S25_RS10355 (B9S25_010880) radC 2047549..2048025 (-) 477 WP_001186725.1 RadC family protein Machinery gene
  B9S25_RS10360 (B9S25_010885) - 2048041..2048526 (-) 486 WP_000849582.1 antirestriction protein -
  B9S25_RS10365 (B9S25_010890) - 2048581..2049399 (-) 819 WP_001234620.1 DUF932 domain-containing protein -
  B9S25_RS10375 (B9S25_010900) - 2049499..2049732 (-) 234 WP_001119729.1 DUF905 family protein -
  B9S25_RS10380 (B9S25_010905) - 2049811..2050161 (-) 351 Protein_2016 IrmA family protein -
  B9S25_RS10385 (B9S25_010910) - 2050241..2050645 (+) 405 WP_000839179.1 transposase -
  B9S25_RS10390 (B9S25_010915) tnpB 2050642..2050989 (+) 348 WP_000612626.1 IS66 family insertion sequence element accessory protein TnpB -
  B9S25_RS10395 (B9S25_010920) - 2051038..2052576 (+) 1539 WP_000099160.1 IS66-like element ISEc22 family transposase -
  B9S25_RS30835 - 2052615..2052728 (-) 114 Protein_2020 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=273663 B9S25_RS10355 WP_001186725.1 2047549..2048025(-) (radC) [Escherichia coli O26:H11 strain FWSEC0001]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273663 B9S25_RS10355 WP_001186725.1 2047549..2048025(-) (radC) [Escherichia coli O26:H11 strain FWSEC0001]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TTGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399