Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   B9S25_RS05615 Genome accession   NZ_CP031922
Coordinates   1136683..1137198 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli O26:H11 strain FWSEC0001     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1131683..1142198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9S25_RS05570 (B9S25_005880) csrA 1132403..1132588 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  B9S25_RS05600 (B9S25_005910) yqaB 1133913..1134479 (+) 567 WP_000273313.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  B9S25_RS05605 (B9S25_005915) yqaA 1134476..1134904 (+) 429 WP_001287457.1 YqaA family protein -
  B9S25_RS05610 (B9S25_005920) gshA 1134977..1136533 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  B9S25_RS05615 (B9S25_005925) luxS 1136683..1137198 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  B9S25_RS05620 (B9S25_005930) emrB 1137262..1138800 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  B9S25_RS05625 (B9S25_005935) emrA 1138817..1139989 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  B9S25_RS05630 (B9S25_005940) emrR 1140116..1140646 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  B9S25_RS05635 (B9S25_005945) ygaH 1140737..1141072 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  B9S25_RS05640 (B9S25_005950) ygaZ 1141062..1141799 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=273652 B9S25_RS05615 WP_001130207.1 1136683..1137198(+) (luxS) [Escherichia coli O26:H11 strain FWSEC0001]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=273652 B9S25_RS05615 WP_001130207.1 1136683..1137198(+) (luxS) [Escherichia coli O26:H11 strain FWSEC0001]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731