Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CCU01_RS22085 Genome accession   NZ_CP031919
Coordinates   4246892..4247497 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O145:NM strain FWSEC0002     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4241892..4252497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU01_RS22065 (CCU01_023020) aes 4242033..4242992 (+) 960 WP_000801812.1 acetyl esterase -
  CCU01_RS22070 (CCU01_023025) hemH 4242989..4243951 (-) 963 WP_001250105.1 ferrochelatase -
  CCU01_RS22075 (CCU01_023030) adk 4244083..4244727 (-) 645 WP_001220233.1 adenylate kinase -
  CCU01_RS22080 (CCU01_023040) htpG 4244908..4246782 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  CCU01_RS22085 (CCU01_023045) recR 4246892..4247497 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  CCU01_RS22090 (CCU01_023050) ybaB 4247497..4247826 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CCU01_RS22095 (CCU01_023055) dnaX 4247879..4249810 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  CCU01_RS22100 (CCU01_023060) apt 4249939..4250490 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CCU01_RS22105 (CCU01_023070) ybaN 4250643..4251020 (-) 378 WP_001188905.1 DUF454 family protein -
  CCU01_RS22110 (CCU01_023075) priC 4251090..4251617 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  CCU01_RS22115 (CCU01_023080) rsmS 4251631..4251792 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  CCU01_RS30590 - 4251845..4251943 (-) 99 Protein_4247 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=273603 CCU01_RS22085 WP_001195025.1 4246892..4247497(-) (recR) [Escherichia coli O145:NM strain FWSEC0002]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=273603 CCU01_RS22085 WP_001195025.1 4246892..4247497(-) (recR) [Escherichia coli O145:NM strain FWSEC0002]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443