Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   CCU01_RS18935 Genome accession   NZ_CP031919
Coordinates   3597017..3597646 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli O145:NM strain FWSEC0002     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3592017..3602646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU01_RS18920 (CCU01_019740) helD 3592259..3594313 (-) 2055 WP_044869326.1 DNA helicase IV -
  CCU01_RS18925 (CCU01_019745) yccF 3594436..3594882 (+) 447 WP_001261235.1 YccF domain-containing protein -
  CCU01_RS18930 (CCU01_019750) yccS 3594892..3597054 (+) 2163 WP_000875041.1 YccS family putative transporter -
  CCU01_RS18935 (CCU01_019755) sxy/tfoX 3597017..3597646 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  CCU01_RS18940 (CCU01_019760) sulA 3597865..3598374 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  CCU01_RS18945 (CCU01_019770) ompA 3598731..3599786 (+) 1056 WP_000750414.1 porin OmpA -
  CCU01_RS18950 (CCU01_019775) matP 3599861..3600313 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  CCU01_RS18955 (CCU01_019780) ycbZ 3600499..3602259 (+) 1761 WP_000156509.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=273595 CCU01_RS18935 WP_000839153.1 3597017..3597646(-) (sxy/tfoX) [Escherichia coli O145:NM strain FWSEC0002]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=273595 CCU01_RS18935 WP_000839153.1 3597017..3597646(-) (sxy/tfoX) [Escherichia coli O145:NM strain FWSEC0002]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1