Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CCU01_RS03950 Genome accession   NZ_CP031919
Coordinates   774140..774616 (+) Length   158 a.a.
NCBI ID   WP_001186728.1    Uniprot ID   -
Organism   Escherichia coli O145:NM strain FWSEC0002     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 769140..779616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCU01_RS03915 (CCU01_004120) - 769452..769862 (+) 411 WP_000848829.1 hypothetical protein -
  CCU01_RS03925 (CCU01_004130) - 770082..770462 (+) 381 Protein_756 DUF932 domain-containing protein -
  CCU01_RS03930 (CCU01_004135) - 770975..772753 (+) 1779 WP_001243195.1 reverse transcriptase/maturase family protein -
  CCU01_RS03935 (CCU01_004140) - 772872..773312 (+) 441 Protein_758 DUF932 domain-containing protein -
  CCU01_RS03940 (CCU01_004145) - 773312..773557 (+) 246 WP_000680587.1 hypothetical protein -
  CCU01_RS03945 (CCU01_004150) - 773651..774124 (+) 474 WP_001444656.1 antirestriction protein -
  CCU01_RS03950 (CCU01_004160) radC 774140..774616 (+) 477 WP_001186728.1 RadC family protein Machinery gene
  CCU01_RS03955 (CCU01_004165) - 774679..774900 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  CCU01_RS03960 (CCU01_004170) - 774976..775344 (+) 369 WP_001443392.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CCU01_RS03965 (CCU01_004175) - 775433..775813 (+) 381 WP_000854687.1 TA system toxin CbtA family protein -
  CCU01_RS03970 (CCU01_004180) - 775810..776298 (+) 489 WP_001054228.1 DUF5983 family protein -
  CCU01_RS03975 (CCU01_004185) - 776318..776515 (+) 198 WP_000772026.1 DUF957 domain-containing protein -
  CCU01_RS03980 (CCU01_004190) - 776600..777445 (+) 846 WP_001274557.1 DUF4942 domain-containing protein -
  CCU01_RS03990 (CCU01_004200) mug 777745..778251 (+) 507 WP_000228947.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17674.35 Da        Isoelectric Point: 7.2020

>NTDB_id=273563 CCU01_RS03950 WP_001186728.1 774140..774616(+) (radC) [Escherichia coli O145:NM strain FWSEC0002]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLLTERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=273563 CCU01_RS03950 WP_001186728.1 774140..774616(+) (radC) [Escherichia coli O145:NM strain FWSEC0002]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATTAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTCTCACCGAACGTCTGGTACAGGCACTGGCCCTGG
TTGACATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386

Multiple sequence alignment